Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2524 ATGCAAGTTCTTCGTTACACGTCTTTTGTTGTAGTATTTTATTCTCTGTTACTAAACCCTTGCCATTGTCTAAATCTCAAATTACTCAATGTTTCCAAGATTCAAAATGAGGATCACTGGCAAATAGCAGCGGCTACATGGTACGGACCACCAAACGGTGGTGGGTCGGATGGGGGTGCATGTGGATACGTTGACAGTGTGGAGAAACCTCCATTCTCTAAAATGGTATCCGCTGGGGGTCCTTCTCTTTTCAATGGCGGCAGAGGATGCGGGGCTTGTTATGAGGTGAAATGCACAGAAAATGCTGCATGCTCGGGAAGGCCGCTGAGAGTGACGATAACTGATGAGTGCCCCGGTTGTACCTTACGATCAGTCCATTTTGATCTGAGTGGCACTGCCTTTGGTTCCATGGCAACTCCAGGCCAGGCAAATAATCTTCGCAACGCTGGACAGATAAATATTCAGTTCAGAAGGGTTGCATGCTCCTTTGGGAAGTCTATAGCCTTTATCATCGATGGTGGGGCCAACCCATACTATTTTGCTACCGAAATAGAATACGAAAGTGGGGACGGTGACCTTGTGGACATTGAGTTGAAGCAAGCTAATTCAAACACATGGCTCCCAATGCAGCGTTCCTGGGGTGCAAGGTGGGCATTGAACTTAGGTTTGCCGTTGCAAGCGCCATTCTCTCTTAAGCTCACAGAGGATGGCAAGAACAATATCAAGAGCATTGTGGCTGATAGTGTAATTCCACATGACTGGCAACCTGGCCGAGTTTATCGATCTGTCATCAATTTTTAA 801 0.4669 MQVLRYTSFVVVFYSLLLNPCHCLNLKLLNVSKIQNEDHWQIAAATWYGPPNGGGSDGGACGYVDSVEKPPFSKMVSAGGPSLFNGGRGCGACYEVKCTENAACSGRPLRVTITDECPGCTLRSVHFDLSGTAFGSMATPGQANNLRNAGQINIQFRRVACSFGKSIAFIIDGGANPYYFATEIEYESGDGDLVDIELKQANSNTWLPMQRSWGARWALNLGLPLQAPFSLKLTEDGKNNIKSIVADSVIPHDWQPGRVYRSVINF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2524 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Ssu4g2524 266 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Ssu4g2524 266 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Ssu4g2524 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Ssu4g2524 266 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Ssu4g2524 266 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Ssu4g2524 266 Pfam Lytic transglycolase 77 156 IPR009009 -
Ssu4g2524 266 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Ssu4g2524 266 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Ssu4g2524 266 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Ssu4g2524 266 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Ssu4g2524 266 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Ssu4g2524 266 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Ssu4g2524 266 Gene3D - 163 266 IPR036749 -
Ssu4g2524 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 262 IPR007117 -
Ssu4g2524 266 PANTHER EXPANSIN-B3 1 266 - -
Ssu4g2524 266 Pfam Expansin C-terminal domain 167 251 IPR007117 -
Ssu4g2524 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 166 IPR007112 -
Ssu4g2524 266 Gene3D - 26 162 IPR036908 -
Ssu4g2524 266 PANTHER EXPANSIN-LIKE PROTEIN B1 1 266 - -
Ssu4g2524 266 SUPERFAMILY PHL pollen allergen 165 262 IPR036749 -
Ssu4g2524 266 SMART dpbb_1 76 156 IPR007112 -
Ssu4g2524 266 SUPERFAMILY Barwin-like endoglucanases 37 163 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2524 Ssu-Chr4 63698454 63701332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2524 19 266 Expansin Gene Family AT1G65680 54.941 3.66e-98 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2524 - - gmx:100786475 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2524 4 63698454 63701332 Ssu4g2524 4 63698454 63701332 ECH