Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2522 ATGAGCCAACGAGTCCCCAGCTGCGATGTGGACGACAACAACATTCCCGCAGCCACAAAACTCCCTCTTCTTCCCATCCCCAATTTCATCGCCTTTGAAGTCCCAATGTTGGGCTACCAAGTTGCGGAACCACCATGCAAAAAGGGACAGCCTTCGACGCGCGAAGACACCACCGGGAACCTTGCCACATGGGACAAGCCCCGTGCAAGTGGCACCTTGGAGTCCATAGTAAACCAACACGTTGGCGAAAACCGCCGCAAGCTGGTTACTATGGACGCCTTAGTGCCCTGTTCCGCGGAACAGGGCACACAGAAGGTATCGGAGTCAGGAAGGGTTGGCGCGTGCAAGACGGGCTGCTCCGCGCGCGTGGTGTCGTGCGGTGGGGCTGCAATCCAGGAGGACGTGAGCAAACGCGCTGGGGTGGTGGCGCGTGGGTCTATGACGCACGAGTTGAGTGATAGCAGGGATTGGAGTGTGAGTGGTAGTGGCACTTGTGGCAGGGGTTTTAGTAGTGAGGCTTTCAATTCTGCGTCCTTGGGTTCGCCGGAAAACACCACCAGCTCCGGCAAACAGTGCACCAGGACCACCGCCAACGACGACCGCGATTCCATTAGCCACCGTAGGTCACAGAGTGAGGCACGGAATGAAGATTACAAGACAGCAAAAGTTGATAGATCATCTGAATCCAACAAAAGAATCAAAGCTTCAGCTGTACACAACCAATCTGAAAGGAGAAGAAGAGATAAGATCAACGAAAGAATGAAAGCATTGCAAAAGCTGGTCCCAAATTCCAGTAAGACCGATAAAGCTTCGATACTGGATGAGGTGATCCAATACATGAAGCAATTGCAAGCGCAAGTGCAAATGATGAATTGGATGAAAATGTACTCCTCCATGATGCTGCCAATTACCATGCAACAACAGCTTAAAATGTCTATGATGATGGCTCAGATGGGCATTGGAATGGGAATGAGTAGTAATATGGTTATGAATATGAACAGCATGAACATTCCCTGCATCCCTCCTGTCCTCCACCCTTCTCCCTTCATGCCTGTAGCCTCATGTGGTGATCGATTACAAGGAGCACCAGAGAAGTCCGTGACCATGGATGCATTCAATAGGATGGCTGCCCTGTATCACCAGCTGTATCATCCTCCAGATTCTAGTTCCAAGGGCTGA 1179 0.5131 MSQRVPSCDVDDNNIPAATKLPLLPIPNFIAFEVPMLGYQVAEPPCKKGQPSTREDTTGNLATWDKPRASGTLESIVNQHVGENRRKLVTMDALVPCSAEQGTQKVSESGRVGACKTGCSARVVSCGGAAIQEDVSKRAGVVARGSMTHELSDSRDWSVSGSGTCGRGFSSEAFNSASLGSPENTTSSGKQCTRTTANDDRDSISHRRSQSEARNEDYKTAKVDRSSESNKRIKASAVHNQSERRRRDKINERMKALQKLVPNSSKTDKASILDEVIQYMKQLQAQVQMMNWMKMYSSMMLPITMQQQLKMSMMMAQMGIGMGMSSNMVMNMNSMNIPCIPPVLHPSPFMPVASCGDRLQGAPEKSVTMDAFNRMAALYHQLYHPPDSSSKG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2522 392 Coils Coil 240 260 - -
Ssu4g2522 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983
Ssu4g2522 392 Pfam Helix-loop-helix DNA-binding domain 238 284 IPR011598 GO:0046983
Ssu4g2522 392 MobiDBLite consensus disorder prediction 195 249 - -
Ssu4g2522 392 MobiDBLite consensus disorder prediction 173 249 - -
Ssu4g2522 392 CDD bHLH_AtPIF_like 234 296 - -
Ssu4g2522 392 MobiDBLite consensus disorder prediction 173 194 - -
Ssu4g2522 392 Gene3D - 229 295 IPR036638 GO:0046983
Ssu4g2522 392 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 391 IPR031066 -
Ssu4g2522 392 PANTHER TRANSCRIPTION FACTOR UNE10-LIKE 39 391 - -
Ssu4g2522 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 301 IPR036638 GO:0046983
Ssu4g2522 392 SMART finulus 240 289 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2522 Ssu-Chr4 63576917 63581401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2522 1 297 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 39.385 4.02e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g2522 HLH 6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2522 - - gmx:100820284 511.916