Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2520 ATGCATTGCTACATCCTAGATATTACTCTGATGAGGCAAGTGCAATTCATCCTATCCCTATCACTGTCTCTTGTTGTTCTTTTTGTTCCAGTCCTGGTGATCTCAATAGACCCTTCTTTCAATGATGATGTGTTGGGGTTGATTGTGTTCAAGGCTGGTCTGGAAGACCCAAAAGGCAAACTCTCTACCTGGAATGAAGATGATTACAGTCCCTGCAACTGGGTTGGTGTCAAATGTGACCCTGCAACCAATAGAGTATCTTCTCTTGTCCTTGATGGATTCTCTCTTTCTGGCCACATTGATAGAGGCCTTTTGAGATTACAGTTCCTTCAGATTCTGTCCCTTTCTAGGAACAACTTCACAGGGACCATAGCTCCTGATCTTCTCAGCATTGGTGATTTGCAAGTTGTTGATTTGAGTGAGAACAACCTCTCTGGACCAATCCCAGATGGGATTTTCCAGCAATGTTGGTCTCTGAGAGTAGTTTCATTTGCTAACAACAACCTCACGGGTAAGATTCCTGGTTCTTTGAGCTCCTGCTACTCATTGGCAGTTGTGAACTTTTCCTCCAATCAGCTACATGGGGAACTACCATCTGGTATGTGGTTTTTGAGGGGACTGCAGTCAATTGATCTTTCAAATAACTTGCTGGAGGGAGAGGTTCCAGAAGGGATTCAGAATCTGTATAATTTGAGGGAGTTAAGGCTAGGGAGGAACCATTTCACTGGTAGAATTCCTGAGGACATTGGAGACTGCTTACTTTTGAAGTTGGTTGATTTCAGTGGTAATTTTCTCTCTGGGAGACTTCCTGAGTCATTGCAAAAACTCACCTCATGCACATTCCTCAGCTTGCAAGGGAATTCATTCACAGGTGGCATTCCACATTGGATTGGAGAAATGAAAAGTCTAGAGATGTTGGATCTTTCTGCAAATAGATTTTCTGGTTGGATTCCAAATTCGGTAGGAAATCTTGACTTGCTGAGTAGGTTAAATCTGTCAAGGAATCAGATCACAGGAAACCTGCCAGAGTTGATGGTAAACTGCATTAAGCTTCTGACTCTTGACATCAGCCACAATCACTTGGCAGGCCATCTTCCTTCATGGATATTTAGGATGGGTTTACAAAGCGTCTCTCTTTCTGGGAATAGCTTTAGTGAGAGCAATTATCCCTCACTTGCTTCCGTTCCTGTATCTTTTCATGGCCTTCAGGTTTTGGATTTGTCATCAAATGCATTTTTTGGCCAACTTCCATCTGGAATTGGAGGTCTTAGTAGCTTGCAAGTCTTGAATTTATCCACCAACAATATCTCTGGTTCTATTCTTGCAAGTATAGGAGAACTTAAATCTTTGTACATTCTTGACTTAAGTGACAACAAGCTTAATGGAAGCATTCCACCTGAATTAGAAGGGGCAATCTCACTCAGTGAAATGAGGCTACAAAAGAACTTCTTAGGTGGGAGAATTCCAGCCCAAATTGAGAAGTGTTCAGAACTAACATTTCTGAATCTTTCTCACAACAAGCTTATTGGTTCAATCCCTTCAGCCATTGCAAACCTAACCAAACTTCAGTATGTAGATTTCTCATGGAATGAACTCTCTGGAAGTTTACCTAAGGAGCTGACAAATCTTTCCCAGCTTTTCTCATTTAATGTTTCATACAACCACCTTCAAGGTGAGCTACCAGTGGGTGGCTTCTTCAATACCATCTCTCCTTCATCTGTCTCTGGTAATCCATTGTTATGTGGTTCTGTTGTTAATCACTCTTGCCCTTCTGTTCATCCAAAGCCCATTGTCCTAAACCCTAATTCTTCTTACTCCAACTCTGGCTCTTCCTTACAAAACCATCATCATAAGTTTATGCTCAGTATCTCTGTCCTTATTGCTATTGGTGCTGCTATTTTCATTGTCATTGGTGTGGTGGTTGTTACTGTCCTAAATATCCATGTGAGGTCTTCGGTGTCACTTTCTGCTGCTCCATTTGTATTCTCTGGTGGTGAGGACTATAGCGGTTCACCCGCGAATGATCCAAACTATGGCAAGCTTGTGATGTTTTCTGGTGATGCTGAATTTGCTGATGGGGCTCATAATCTGCTTAACAAAGACAATGAAATAGGCCGCGGAGGATTTGGAGTTGTTTATTGCACTGTCCTTAAAGATGGTCATTATGTTGCAATCAAGAAGCTTACAATGTCCACCTTGGCCAAGTCTCAGGAAGACTTTGAGAGGGAGGTTAAAAAGCTTGGGGAGATTAAGCATCAAAATCTTGTGGCACTTGAAGGTTACTATTGGACTCCATCCTTGCAGCTCTTAATTTATGAGTACCTAGCCAGAGGGAGTTTGCAAAGGCTTCTACATGATGAGGATGATGATAATAGTAGAAATGTGCTTTCTTGGAGACAAAGGTTCAAGATCATTCTTGGAATGGCAAAAGGGTTGGCCTATGTCCACCAAATGGAGTTAATTCATTATAATCTAAAATCAACCAATGTTTTTATAGATTGTTCTGATGAGCCAAAGATAGGAGACTTTGGCTTGGTGAGGCTATTGCCAGTGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCTCCTGAGTTCGCTTGCCGCACGGTCAAGATAACCGAGAAATGTGACATTTATAGTTttggaattttgattttggaggTGGTGACAGGAAAAAGACCTGTGGAATACATGGAGGATGATGTGGTTGTTCTTTGTGACAAGGTAAGGAGTGCATTGGATGATGGCAAAGTGGAGCAATGTGTTGATGAGAAGCTTATGGGTAATTTTGCTGCAGAAGAAGCAATTCCTGTGATAAAATTGGGGTTGGTTTGTGCATCACAAGTACCCTCAAACCGTCCAGATATGGCTGAGGTAGTCAACATATTAGAGTTGATCCAATGCCCTTCAGAGGAATTACAATGA 2946 0.4158 MHCYILDITLMRQVQFILSLSLSLVVLFVPVLVISIDPSFNDDVLGLIVFKAGLEDPKGKLSTWNEDDYSPCNWVGVKCDPATNRVSSLVLDGFSLSGHIDRGLLRLQFLQILSLSRNNFTGTIAPDLLSIGDLQVVDLSENNLSGPIPDGIFQQCWSLRVVSFANNNLTGKIPGSLSSCYSLAVVNFSSNQLHGELPSGMWFLRGLQSIDLSNNLLEGEVPEGIQNLYNLRELRLGRNHFTGRIPEDIGDCLLLKLVDFSGNFLSGRLPESLQKLTSCTFLSLQGNSFTGGIPHWIGEMKSLEMLDLSANRFSGWIPNSVGNLDLLSRLNLSRNQITGNLPELMVNCIKLLTLDISHNHLAGHLPSWIFRMGLQSVSLSGNSFSESNYPSLASVPVSFHGLQVLDLSSNAFFGQLPSGIGGLSSLQVLNLSTNNISGSILASIGELKSLYILDLSDNKLNGSIPPELEGAISLSEMRLQKNFLGGRIPAQIEKCSELTFLNLSHNKLIGSIPSAIANLTKLQYVDFSWNELSGSLPKELTNLSQLFSFNVSYNHLQGELPVGGFFNTISPSSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSYSNSGSSLQNHHHKFMLSISVLIAIGAAIFIVIGVVVVTVLNIHVRSSVSLSAAPFVFSGGEDYSGSPANDPNYGKLVMFSGDAEFADGAHNLLNKDNEIGRGGFGVVYCTVLKDGHYVAIKKLTMSTLAKSQEDFEREVKKLGEIKHQNLVALEGYYWTPSLQLLIYEYLARGSLQRLLHDEDDDNSRNVLSWRQRFKIILGMAKGLAYVHQMELIHYNLKSTNVFIDCSDEPKIGDFGLVRLLPVLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYSFGILILEVVTGKRPVEYMEDDVVVLCDKVRSALDDGKVEQCVDEKLMGNFAAEEAIPVIKLGLVCASQVPSNRPDMAEVVNILELIQCPSEELQ 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2520 981 Pfam Leucine rich repeat 282 337 IPR001611 GO:0005515
Ssu4g2520 981 Pfam Leucine rich repeat 401 460 IPR001611 GO:0005515
Ssu4g2520 981 Gene3D Ribonuclease Inhibitor 301 592 IPR032675 -
Ssu4g2520 981 Gene3D Transferase(Phosphotransferase) domain 1 775 979 - -
Ssu4g2520 981 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Ssu4g2520 981 SMART LRR_typ_2 324 348 IPR003591 -
Ssu4g2520 981 SMART LRR_typ_2 349 372 IPR003591 -
Ssu4g2520 981 SMART LRR_typ_2 131 155 IPR003591 -
Ssu4g2520 981 SMART LRR_typ_2 204 227 IPR003591 -
Ssu4g2520 981 SMART LRR_typ_2 399 423 IPR003591 -
Ssu4g2520 981 SMART LRR_typ_2 300 323 IPR003591 -
Ssu4g2520 981 SMART LRR_typ_2 228 252 IPR003591 -
Ssu4g2520 981 SMART LRR_typ_2 447 471 IPR003591 -
Ssu4g2520 981 SMART LRR_typ_2 519 542 IPR003591 -
Ssu4g2520 981 SMART LRR_typ_2 543 567 IPR003591 -
Ssu4g2520 981 Gene3D Phosphorylase Kinase; domain 1 683 774 - -
Ssu4g2520 981 SUPERFAMILY L domain-like 293 573 - -
Ssu4g2520 981 Pfam Protein tyrosine and serine/threonine kinase 699 968 IPR001245 GO:0004672|GO:0006468
Ssu4g2520 981 SUPERFAMILY L domain-like 58 388 - -
Ssu4g2520 981 SUPERFAMILY Protein kinase-like (PK-like) 698 974 IPR011009 -
Ssu4g2520 981 ProSiteProfiles Protein kinase domain profile. 698 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2520 981 Gene3D Ribonuclease Inhibitor 199 296 IPR032675 -
Ssu4g2520 981 Gene3D Ribonuclease Inhibitor 41 198 IPR032675 -
Ssu4g2520 981 ProSitePatterns Protein kinases ATP-binding region signature. 704 727 IPR017441 GO:0005524
Ssu4g2520 981 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 11 974 - -
Ssu4g2520 981 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 974 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2520 Ssu-Chr4 63545118 63548223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2520 21 977 Receptor kinase-like Gene Family AT3G56370 60.062 0.0 1112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Ssu4g2520 Pkinase 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2520 - - gmx:100791204 1731.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0950 3 22498422 22501490 Ssu4g2520 4 63545118 63548223 PCT