Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2516 ATGGGCTTCGAGTCAAGGGTCTTTGAGGCCTCCAAAGATGAACTTGACTTCAAGGTTTTTGAACTAACCTCAGACGACATCCTTAGCCTTAAGGAGAAGGCCAAGGGTAGCACCGTTGCCCATGCCACCAGTTCTAACGTTATCACTGCCCATATATGGAGATGTAAGGCATCATCTGCACTGTATAACCCTACTAGGTTATCTACCATACTATATGCTGTGAATATACGTTCAAGGATGAACCCTCCATTGTCGAAAGTGTACGCCGGCAATGTCGTATTGACGACGTACGCCACGACAAAGTATGAGGAATTGGAGAAGGTCCTTTCTCAAGCTTGGTGGAGATGGTGA 351 0.4644 MGFESRVFEASKDELDFKVFELTSDDILSLKEKAKGSTVAHATSSNVITAHIWRCKASSALYNPTRLSTILYAVNIRSRMNPPLSKVYAGNVVLTTYATTKYEELEKVLSQAWWRW 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2516 116 Pfam Transferase family 8 106 - -
Ssu4g2516 116 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 5 107 - -
Ssu4g2516 116 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 107 - -
Ssu4g2516 116 Gene3D - 5 115 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2516 Ssu-Chr4 63418445 63420264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2516 19 95 Monolignol Biosynthesis Gene Families AT5G48930 38.750 1.09e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2516 K13065 K15400 gmx:100780971 159.073