Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2504 ATGGAGTCAAGGAGCTGCATGAACGTGGCGTGCGCCACCTTGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTTCGATCCGGCGAATTCGCCGATCTCTGTGATAAGTGCGGTTCTGCTTATGAGCAATCAACATATTGTGATATGTTCCATGCAAATGATTCTGGTTGGAGAGAATGCACTTCATGTGACAAGCGTCTCCATTGCGGATGCATTGCTTCCATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTACAAGCTGCGCAAGAAATTCAAGACTGCAACCTATTGCAAGCGATGAAAAGCCTAATGGATCTGGGACATCAAAGGTAAACAATGTCAGTGCACAGCAGTGCACATCTCTGGCTAACCAATTAAATGTGAGGGGTATGCAAGTAGGGCATTATGCAGAGAATGATGGGCTTAGGTGCTGGTTCAAACCTCATAATGTTGAAACAGATGGGCCTTCTACAGAAATGAAACCAGAAATTTTGCCTTCTGTTGGAGAACTTGGAAGCACTTTGATATCACAATTTCATTGTGAGTCTAATGGACCATCTAAGGCTTCCAAAGCAGAGAGTAAGGCAGACACACAAATGCGAGATATATATGAATCATTGGCACAGACAAATTTGAGTATGACCCTTGCTGCTCCTTTAGGAAATTCAAATCCCTTTCATAGTGCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCTTCTCCACTTTTATTGGGGTCAAGGTCTCGCCATCTTTTACCCAAGCCCCCTAGGTCAACTATTGGCACAGGCTTAGAAGCAAATGCAGGCATGGTATCCCAGATTCGTGTAGCAAGGCCTCCCGCTGAAGGACGGGGAAGGAATCAGTTGCTTCCGCGTTATTGGCCTAGGATTACTGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCCACAATCGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAGGCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAACAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGAATGGACCCTGAGGGAAAACTTATAATGGGTTTTAGGAAGGCAACAAATTCTACTTTAGTACAGGAAACACTACCATCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACTCACCTAAATGCGCTGTCTAAAAAATGGAACTCAGCTGGTGGTGACATGAATTGGCATAACATTGACATGCCTGAAAGCAGGAAAAGAGAGGGATTGCCGTTGCCACCTGTGCTTGTTCCTGAGAAGAAAAGGACTCGGAATATTGGGTCAAAGAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTTAAACTTACTTGGGAAGAGGCTCAGGATTTGCTCCGTCCACCTCCTACTGTTAAGCCAAGCATTGTCATGATTGAGGATCATGTATTTGAAGAATATGAAGAACCTCCCGTATTTGGAAAGAGGAGTATATTCGTAGTTCGATCAACTGGGGTAAATGAGCAGTGGACGCAGTGTGATAGTTGCTCAAAATGGCGTAAGTTGCCAGTTGATGTACTTATTCCCCCAAAGTGGACTTGTGTGGAGAATTTATGGGATCAGAGCAGGTGTTCATGTGCTGCTCCCAGTGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGCTGAATAAAGAATTCAAGAAACAAAGATTGGCAGCAAGCCAGAGACCATCCCTGGAACACGAATCTTCAGGACTGGATGCTTTGGCAAATGCAGCAATACTGGGAGATGATGCAAGTGACTCTGGCAGGACTCCAGTCGTTACCACTACTAAACATCCTCGACATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAGCGTCAATCCGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGTTATCGTGGCGGACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCAAGTTGACGGTTTGGAGAATGAAGTAAGGGTGCCAAATGAGTTGGATTCAAGGAGTCAAGACCATGTGGTGGCTGAAGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCTGATCGAGAAGACATGCAAGCTGGGCCAAACAGTGTGAGCATGACGAGCCTTCTTGAAGAAGCAAATCTCCCGCTGGAGACCTATCTGAAGCAAAATGGCCTTACTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAATGAGAGTGAGGGAAGACACAATGAGGATTGCTGTACTGCCTCGGTTATTCATGAGCAGGAAAGCAGTCCTGAAGAGAATAGTGCACAAGATAAAGACCAAAACAATTCGCTCCCATGA 2724 0.4468 MESRSCMNVACATLTTIRWRKGWALRSGEFADLCDKCGSAYEQSTYCDMFHANDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCTSCARNSRLQPIASDEKPNGSGTSKVNNVSAQQCTSLANQLNVRGMQVGHYAENDGLRCWFKPHNVETDGPSTEMKPEILPSVGELGSTLISQFHCESNGPSKASKAESKADTQMRDIYESLAQTNLSMTLAAPLGNSNPFHSAVVDEREQSKTSSPLLLGSRSRHLLPKPPRSTIGTGLEANAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTLVQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNALSKKWNSAGGDMNWHNIDMPESRKREGLPLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSIVMIEDHVFEEYEEPPVFGKRSIFVVRSTGVNEQWTQCDSCSKWRKLPVDVLIPPKWTCVENLWDQSRCSCAAPSELNPRELDNLLRLNKEFKKQRLAASQRPSLEHESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESEVDSTSRHLTQVDGLENEVRVPNELDSRSQDHVVAEAAKGQLDLNCQPDREDMQAGPNSVSMTSLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQAQTTNESEGRHNEDCCTASVIHEQESSPEENSAQDKDQNNSLP 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2504 907 SMART B3_2 321 421 IPR003340 GO:0003677
Ssu4g2504 907 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 859 - -
Ssu4g2504 907 CDD B3_DNA 319 420 IPR003340 GO:0003677
Ssu4g2504 907 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Ssu4g2504 907 Gene3D - 299 425 IPR015300 -
Ssu4g2504 907 ProSiteProfiles Zinc finger CW-type profile. 586 636 IPR011124 GO:0008270
Ssu4g2504 907 Gene3D - 589 645 - -
Ssu4g2504 907 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Ssu4g2504 907 MobiDBLite consensus disorder prediction 883 907 - -
Ssu4g2504 907 SUPERFAMILY DNA-binding pseudobarrel domain 318 420 IPR015300 -
Ssu4g2504 907 MobiDBLite consensus disorder prediction 854 870 - -
Ssu4g2504 907 MobiDBLite consensus disorder prediction 854 907 - -
Ssu4g2504 907 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 859 - -
Ssu4g2504 907 MobiDBLite consensus disorder prediction 236 267 - -
Ssu4g2504 907 Pfam CW-type Zinc Finger 591 633 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2504 Ssu-Chr4 63156647 63164518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2504 1 876 B3 DNA Binding Superfamily AT4G32010 50.338 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu4g2504 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2504 - - gmx:100778833 1735.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2504 4 63156647 63164518 Ssu4g2504 4 63156647 63164518 ECH