Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2497 ATGAAAGGGGGAGCATGCGGATACGGAAATTTGTTTCAACAAGGCTATGGAACCGCTACAACGGCGTTAAGCACTGCCCTTTTCAACCGTGGGCTTACTTGTGGGGCATGTTTCCAACTGGTTTGCCACAATGACCCACAATGGTGCATCCGTGGCGCTGGCCCTATCACCGTGACTGCAACAAACTTCTGTCCCCCTAATGCCTCGTCCGCGAACGGTCCTGGTTGGTGCAATCCCCCGCTGTTACATTTTGATTTATCAGAGCCTGCTTTCACCAAAATTGCCCAATACAGAGCTGGAATTGTTCCTGTGCTCTTCAGAAGGGTGTTGTGTGTGAGGAGGGGAGGTATAAGGTTCACCATAAATGGGAATCCAAACTTCTATTTGGTGCTGATATCAAATGTGGGAGGGGCAGGAGATGTGAGAGCCGTGTCAGTGAAAGGATCAGCAACTGGGTGGCTACCAATGACAAGAAATTGGGGTCAGAATTGGCAAAGCAACACACATCTTGTCGGCCAGAGTCTGTCCTTCGTAGTCACAACCAGCGATGGTCGATCAGTAGCCAGTTACAATGTGGTACCTGCTGGTTGGAAATTTGGACAAACCTTTGAAGGTCGTCAATTTTGA 627 0.4928 MKGGACGYGNLFQQGYGTATTALSTALFNRGLTCGACFQLVCHNDPQWCIRGAGPITVTATNFCPPNASSANGPGWCNPPLLHFDLSEPAFTKIAQYRAGIVPVLFRRVLCVRRGGIRFTINGNPNFYLVLISNVGGAGDVRAVSVKGSATGWLPMTRNWGQNWQSNTHLVGQSLSFVVTTSDGRSVASYNVVPAGWKFGQTFEGRQF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2497 208 Pfam Lytic transglycolase 20 105 IPR009009 -
Ssu4g2497 208 PANTHER EXPANSIN 3 208 - -
Ssu4g2497 208 Gene3D - 116 208 IPR036749 -
Ssu4g2497 208 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 126 205 IPR007117 -
Ssu4g2497 208 SUPERFAMILY PHL pollen allergen 113 205 IPR036749 -
Ssu4g2497 208 PRINTS Expansin signature 42 53 IPR002963 GO:0009664
Ssu4g2497 208 PRINTS Expansin signature 191 207 IPR002963 GO:0009664
Ssu4g2497 208 PRINTS Expansin signature 56 66 IPR002963 GO:0009664
Ssu4g2497 208 PRINTS Expansin signature 15 29 IPR002963 GO:0009664
Ssu4g2497 208 PRINTS Expansin signature 74 91 IPR002963 GO:0009664
Ssu4g2497 208 PRINTS Expansin signature 162 183 IPR002963 GO:0009664
Ssu4g2497 208 PRINTS Expansin signature 91 104 IPR002963 GO:0009664
Ssu4g2497 208 PRINTS Expansin signature 115 127 IPR002963 GO:0009664
Ssu4g2497 208 PRINTS Expansin signature 127 148 IPR002963 GO:0009664
Ssu4g2497 208 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 3 116 IPR007112 -
Ssu4g2497 208 Pfam Expansin C-terminal domain 117 194 IPR007117 -
Ssu4g2497 208 PANTHER EXPANSIN-A15 3 208 IPR002963 GO:0009664
Ssu4g2497 208 Gene3D - 1 111 IPR036908 -
Ssu4g2497 208 PRINTS Expansin/Lol pI family signature 24 42 IPR007118 GO:0005576
Ssu4g2497 208 PRINTS Expansin/Lol pI family signature 2 20 IPR007118 GO:0005576
Ssu4g2497 208 PRINTS Expansin/Lol pI family signature 99 115 IPR007118 GO:0005576
Ssu4g2497 208 PRINTS Expansin/Lol pI family signature 153 167 IPR007118 GO:0005576
Ssu4g2497 208 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Ssu4g2497 208 SUPERFAMILY Barwin-like endoglucanases 3 134 IPR036908 -
Ssu4g2497 208 SMART dpbb_1 20 106 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2497 Ssu-Chr4 63014255 63015817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2497 3 208 Expansin Gene Family AT5G05290 73.077 1.27e-105 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2497 - - gmx:100797425 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2497 4 63014255 63015817 Ssu4g2497 4 63014255 63015817 ECH