Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2495 ATGAGTTGCAGAGAAAGGAGCAAagggaaaagagaagagaaggagTATGAGGACAGTTCTATGGGATTGGATTCAAAATCAGTGGGGAAGAACAATGGTTCAATAGAAAACGAGCAGCTAACAATTGATGAGAATCTTCTGATTGACCCCCAACTATTGTTTATTGGGTCAAAAATTGGAGAGGGAGCTCATGGGAGAGTTTATGAAGGAAGGTATGGAGATCGGATTGTTGCGATTAAAGTTCTTCATCGTGGGAGTACTTCAGAAGAAAGAGTTGCCCTTGAAAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTGAAGTTTATTGGAGCCTGTAAGGATCCTCTGATGGTGCTTGTTACAGAGATGTTACCTGGGCTGTCACTACGAAAATATCTGATCACAATACGCCCTAAACAATTAGACCTTTATGTGGCTATAAAGTTTGCCCTTGATATTGCTCGAGCCATGGATTGGTTACATGCCAATGGGATCATACATAGAGATCTGAAACCTGACAATCTGCTACTCACAGAAAACCAGAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCGGAAACTGGAACTTACCGTTGGATGGCACCTGAGTTGTACAGTACTGTGACATTGCGTCAAGGGGAGAAAAAGCATTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAGGGGATGTCCAATTTACAAGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCTGGTGATATATCTCCTGATCTTGCCTTTATCATACAATCATGCTGGGTTGAAGATCCTAACATGAGACCATGCTTCAGTCAGATTATCCGCATGCTCAATGAGTTTCTCTTCTCACTCGAACAACCACCCCCTTCATTGCCGCTGGAACCTGACAACGAACCTGAGGCCGTAGCAAGTAATGGTTCCATAACTGACTTTTCTACCCGAAATTATAAAgcaaagttttcttttcttcgccACTTGTTTTCTTCAAAGAGGGCCAAAAGCTAA 1116 0.4059 MSCRERSKGKREEKEYEDSSMGLDSKSVGKNNGSIENEQLTIDENLLIDPQLLFIGSKIGEGAHGRVYEGRYGDRIVAIKVLHRGSTSEERVALENRFAREVNMMSRVHHENLVKFIGACKDPLMVLVTEMLPGLSLRKYLITIRPKQLDLYVAIKFALDIARAMDWLHANGIIHRDLKPDNLLLTENQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPGDISPDLAFIIQSCWVEDPNMRPCFSQIIRMLNEFLFSLEQPPPSLPLEPDNEPEAVASNGSITDFSTRNYKAKFSFLRHLFSSKRAKS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2495 371 Gene3D Phosphorylase Kinase; domain 1 41 132 - -
Ssu4g2495 371 MobiDBLite consensus disorder prediction 1 32 - -
Ssu4g2495 371 Pfam Protein tyrosine and serine/threonine kinase 55 314 IPR001245 GO:0004672|GO:0006468
Ssu4g2495 371 SUPERFAMILY Protein kinase-like (PK-like) 52 335 IPR011009 -
Ssu4g2495 371 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 23 341 - -
Ssu4g2495 371 Gene3D Transferase(Phosphotransferase) domain 1 136 335 - -
Ssu4g2495 371 PANTHER SERINE-THREONINE PROTEIN KINASE 23 341 - -
Ssu4g2495 371 SMART serkin_6 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2495 371 ProSitePatterns Protein kinases ATP-binding region signature. 59 80 IPR017441 GO:0005524
Ssu4g2495 371 MobiDBLite consensus disorder prediction 1 21 - -
Ssu4g2495 371 CDD STKc_MAP3K-like 59 314 - -
Ssu4g2495 371 ProSiteProfiles Protein kinase domain profile. 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2495 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2495 Ssu-Chr4 62971650 62976051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2495 41 368 MAP Kinase Kinase Kinase AT5G01850 71.955 5.61e-178 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu4g2495 PK_Tyr_Ser-Thr 2.6e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2495 - - gmx:100816708 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0971 3 22733324 22737317 Ssu4g2495 4 62971650 62976051 PCT