Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2493 ATGTACAAGGGGAGATTAGGAGGTAAAGCTCAGCTTGGATATGTTGAGACTGACCCATCTGGTCGATATGGACGTTTCAGGGACATTCTAGGCAAAGGAGCTGTGAAGGTAGTGTATAGGGCATTTGATGAGGTCCAAGGAATAGAGGTGGCTTGGAACCAAGTCAAGCTTGGTGATGTCTTTCATTCACCAGATCTACTTCAGCGCCTCTATTCAGAGGTTCATCTCCTCAAGAACTTGGAACATGACTCTATCATGACCTTCCATGATTCTTGGATTGAAGTCAATTGTAGAACCTTCAACTTCATCACCGAACTGTTCACTTCTGGCACCCTACGAGAGTATAGAAAGAAGTACCAGCGAGTAGATGTCAGAGCAGTGAAGAACTGGGCACGCCAGATTCTGAGTGGTTTGGAGTATTTGCACAGTCATGATCCTCCTGTGATACATAGAGACCTCAAGTGTGATAATATCTTCATCAATGGCCATCTGGGGCAGGTCAAGATTGGTGATTTGGGCCTTGCAGCCATTCTCCGTGGCTCCCAACATGCACACAGTGTCATAGGTACACCGGAATTTATGGCACCAGAATTGTATGAAGAGGAATACAATGAGCTGGTAGACATATACTCCTTTGGGATGTGTATGATAGAAATATTTACTTCTGAGTTCCCATACAGCGAGTGCTCCAACCCTGCTCAAATATACAAGAAAGTTACTTCGGGGAAGCTGCCAGATGCCTTTTACAGAATCCAAGACTTGGAAGCCCAGAGGTTTGTGGGAAAATGTTTGGCAAATGTCTCAGAGAGGTTGTCAGCAAAGGAGCTCTTGTTGGACCCATTTTTAGCCCCGGACCAACTAGACTCTCCACTGCCTAGCCCAACATTACCCAGAAAACAAACTCCCACGCTCAATTTCACTGCATCACTTGCCAAAGAGCTACCTCCAATGAGTGACCAAACAAAGGACACACACATGACAATCACTGGATCAATAAATGAAGAGGATGACACACTTTTCCTTAAAGTAcaaatttctaacaaaaatgGgcaaaagagaaatatatactTTCCATTTGACACCATAAATGACACTGCCATTGATGTGGCAATGGAGATGGTTAAAGAACTGGAAATTAGTGACTTGGAACCATTGAAGATTGCTGAAATGATTGAGGAGGAAATATCAGCTTTTGTCCCAACATGGAGGGATTGGGGCACTTCTAAGTATCAAAGACAGCATAGTTTTAGCTATGAAGAAGAGTATGATACCAGCAATCACCACCCTTTCTTCTCATCATCTTCTTGCTCTTCCTCTCCTGGTTCTCTTCCAATGTTTGGTTCTTCCTACAAGAATAATTCCCACCTTCGTTGGAACCATCACCCTTTTGCTAAAGATTGGCCTCAAGATGAACTATTCATGAATGATGATGCAAGCTCTCAAAGCTCAATGAACTCCATCAAGTGTTTCGATTTCCATTGCTGCGACCTGGGCAATGAAGATAAGCATGATCCAACTCTGGTAGTAGGAGCAGAACCCCTTTGCTACACCCCAAAAGGCAACGAAAAGTGCACAAGATTCTGTCCTCGAGAAGAATTGATGGATGCTGATTTCACCAAACAGTTTTGCAACGTGAGAATGGATTCTCACAGGTGTCACGGAATCCATAGGCTAACCAGGATGCGTTCCTTTGTGGATGTGAGGAGACACCAACTGCAACGATCACTTATAGAAGAGATTCACAAGAGGAGAATGTTCAAGACGGTTGGTGCCATTGAGAGCATTGGGTTTCAGAATCCAGAAGGAGGTGGACGTTTTTCTTATTGA 1827 0.433 MYKGRLGGKAQLGYVETDPSGRYGRFRDILGKGAVKVVYRAFDEVQGIEVAWNQVKLGDVFHSPDLLQRLYSEVHLLKNLEHDSIMTFHDSWIEVNCRTFNFITELFTSGTLREYRKKYQRVDVRAVKNWARQILSGLEYLHSHDPPVIHRDLKCDNIFINGHLGQVKIGDLGLAAILRGSQHAHSVIGTPEFMAPELYEEEYNELVDIYSFGMCMIEIFTSEFPYSECSNPAQIYKKVTSGKLPDAFYRIQDLEAQRFVGKCLANVSERLSAKELLLDPFLAPDQLDSPLPSPTLPRKQTPTLNFTASLAKELPPMSDQTKDTHMTITGSINEEDDTLFLKVQISNKNGQKRNIYFPFDTINDTAIDVAMEMVKELEISDLEPLKIAEMIEEEISAFVPTWRDWGTSKYQRQHSFSYEEEYDTSNHHPFFSSSSCSSSPGSLPMFGSSYKNNSHLRWNHHPFAKDWPQDELFMNDDASSQSSMNSIKCFDFHCCDLGNEDKHDPTLVVGAEPLCYTPKGNEKCTRFCPREELMDADFTKQFCNVRMDSHRCHGIHRLTRMRSFVDVRRHQLQRSLIEEIHKRRMFKTVGAIESIGFQNPEGGGRFSY 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2493 608 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 600 - -
Ssu4g2493 608 SUPERFAMILY Protein kinase-like (PK-like) 26 324 IPR011009 -
Ssu4g2493 608 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Ssu4g2493 608 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 7 600 - -
Ssu4g2493 608 CDD STKc_WNK 22 282 - -
Ssu4g2493 608 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Ssu4g2493 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Ssu4g2493 608 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2493 608 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2493 608 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2493 Ssu-Chr4 62775870 62781179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2493 12 426 MAP Kinase Kinase Kinase AT3G51630 67.788 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu4g2493 Pkinase 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2493 K08867 - gmx:100816187 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2493 4 62775870 62781179 Ssu4g2493 4 62775870 62781179 ECH
Ssu3g0976 3 22826689 22831608 Ssu4g2493 4 62775870 62781179 PCT