Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2492 ATGGGGAATCACAGATTTAAGTTATCAGACATGATTCCAAATGCCTGGTTTTACAAGCTGAGGGACATGGGTAGAGGAAGAAATTCAAGAAAGCAAAACACCACACCCTCCAGGAAAAAGAAGCAATCTTCATCCCCCCCAACCACACATTCatcaaaaccaaaccaaccccACCAccaattcaacaacaacaaccccAGAAAGTCCTACTACTTCACAAGAGACCTTactccaaccaacaacaaactCCACACCTCACCCTCAAACACCCCAAAAACCTCACACCCCAATTCCCCTCCAAGAAAATCAACCAAACAAAGAGCCAAAAGAAGAACCCCAATAACCCCAAAACTTGTCTCTTCAGGTTGTAGCTGCCGCACCACCCTCGAATCCATGTGGACCAAATCAGATTCCCCACAAGAACACTCTTCCTCATCCCCATTTGACACCTCTCCCGAGTCACAATATTCCCCAGAATTCAGAACAGACCGTGCTCTCCCCACTGGGTCATCATTCGACGAAATGGTGTCCTTGTCCACCACCTCTTGCGCCTCTTGCAGGctcaacacaaacaaaaacaaccCCACCAACGACATCATCATCGACGTGGACAAGAACTCCATTGCAAGAAAAGATAACAAGCTTGATGGCTACTACAATTACAACAACAAAGACGACTATGATGACACCTTCTCAGAAGTCGAGCTTCCTCCAATCATAACCAAGCCACACTTGTTAAAGAAGAGAGAACTCAAACAAGGGTCCTTGAAGGTGAGAATTGTGAAGGAAGACACTGCAACAACGAAGGAACAGAGGAATGGTTCTGTGAGAAGGTTATCTGTGAGTTCTCCCGGGGTGAGGTTGAGGGTCCACTCGCCGAGAATTGCCGGCTGGAAGGGCCGGAAAAGCGTGTCGTCCACGGCGAGTTCCGGCTCCCGGAGAAGCCTCTCCGATAGCTTTGCGGTTGTGAAGTCATCGTTTGACCCGCAGAAGGATTTCAGGGAGTCCATGGTGGAGATGATTATGGAGAACAACATAAGGGCATCCAAGGACCTGGAAGATCTACTTGCTTGCTACCTTTCTCTCAATTCAGATGAGTATCATGACCTCATCATCAAAGTGTTCAAGcaaatttggtttgatttgacTCAACCAAGgtag 1161 0.435 MGNHRFKLSDMIPNAWFYKLRDMGRGRNSRKQNTTPSRKKKQSSSPPTTHSSKPNQPHHQFNNNNPRKSYYFTRDLTPTNNKLHTSPSNTPKTSHPNSPPRKSTKQRAKRRTPITPKLVSSGCSCRTTLESMWTKSDSPQEHSSSSPFDTSPESQYSPEFRTDRALPTGSSFDEMVSLSTTSCASCRLNTNKNNPTNDIIIDVDKNSIARKDNKLDGYYNYNNKDDYDDTFSEVELPPIITKPHLLKKRELKQGSLKVRIVKEDTATTKEQRNGSVRRLSVSSPGVRLRVHSPRIAGWKGRKSVSSTASSGSRRSLSDSFAVVKSSFDPQKDFRESMVEMIMENNIRASKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTQPR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2492 386 MobiDBLite consensus disorder prediction 23 121 - -
Ssu4g2492 386 Pfam DNA-binding domain 1 45 IPR025830 GO:0003677
Ssu4g2492 386 MobiDBLite consensus disorder prediction 38 101 - -
Ssu4g2492 386 Pfam Transcriptional repressor, ovate 326 382 IPR006458 -
Ssu4g2492 386 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 320 383 IPR006458 -
Ssu4g2492 386 ProSiteProfiles OVATE domain profile. 322 381 IPR006458 -
Ssu4g2492 386 MobiDBLite consensus disorder prediction 134 168 - -
Ssu4g2492 386 PANTHER TRANSCRIPTION REPRESSOR OFP1-LIKE 3 384 - -
Ssu4g2492 386 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 384 IPR038933 GO:0045892
Ssu4g2492 386 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2492 Ssu-Chr4 62721752 62722912 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Ssu4g2492 Ovate 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2492 - - gmx:100803805 553.518