Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2491 ATGGCGATTTCTCCTGAAGCGTTCCAAACCCGAAAACGACGACCCTCGGGGGCGTCGTTTATCTCTCCGAAGCTAAACGACCTTAACCTCCTCTACTCTCTGCTTCAACTCACGGATCAGATATGTACCCTCAACCTCACCAACACCGCGAACTTCCTCCTAAACCGCACTTCCTCTTCCACCATCCGCAAAACGCAGCTCCTCGGTGTCGTTTTCGAGGACCTAATTCGCGTTTCGAATTCCAATCCCGTTCTATTCCCCTATTCTCTCGTCCTCTGCCTCGAGGAAATGCACATCGTTCTCCACAAAGTCAAAACCCTAATCGAAGATTCCTCCAACGCAAGCAAGTTCAATTTGCTCATGCAAATCGAAACCGTCGCCGATAATTTCCACAGGCTCACCGGAGAACTCTCCACGCTCCTCGACGTCTTCCCTCTCCAAGAGTTAGACCTAAACGACGACGTTCGGGAACTCGTTCTCCTCGTCCGAAAACAGTGCTCAGAATCGAAACCGGCGATCGGAACCGAACAAATCAGCCTCCGGAACGAGGTCGTTTCGGTCCTCGACCGGATCAAGAACGAGATCGTTCCCGATCAAGCGCATCTCTCGTCGATTTTCGAGAAACTCGAGATTCGCGACGCGTCGAGCTGCAGAGCTGAGATTGAGAATCTGGAAGAGGAGATTCACAATCGGAGCGAAGAACAATCGAAAACGGACCTCGTCGCGTTGATCGGCCTCGTTCGTTTCGCGAAGTGCGTTGTCTTCGGCGCCTCCACGCTGTCGCCGCAAAACGTCACTCTCCGGCGGAATCACTCGTCGGAGCTGGTAATTCCGGCGGATTACCGGTGTCCGATAAGCCTAGAACTAATGCGCGACCCTGTCGTCGTGGCGACGGGACAGACGTACGATCGCGTATCGATCAAACTCTGGATGGACTCTGGACACAACACGTGTCCCAAAACGGGTCAAACTTTATCACACACCGACCTAATCCCCAATCGCGTCCTCAGGAACATGATAGCCACGTGGTGCCGCGAGCAGAGAATCCCCTTTGAAGCAGAAGCCGTTGCAGGAAAAATCAACGGCGGAGTAACCAACAAAGCTGCGTTAGAAGCCACGCGAATGACGGTGTCGTTTTTAGTCAACAAGCTCAAGGACAATATTAATGACCCTTTGCCAGTGGAAGACACAAACGGCGTCGTTTACGAGCTTCGGGTTTTAGCGAAAACAGACTCTGATAGCCGAGCCTGCATCGCCGAAGCGGGGGCGATCCCGCTTTTGGTTCGGCTCCTCAGCTTCGGAGGCGATGAGCGAAACCCGAGCCTGCAGGTTAACGCCGTCACGACGATTTTGAATTTGTCTATTCTGGAGGCGAATAAGACGAGGATAATGGAGACTGACGGCGCGTTGAACGGCGTCGCGGAGGTTTTAATTGCGGGTGCCACGTGGGAGGCGAAGGCGAACGCGGCGGCTACGGTGTTTAGTTTGTCGGGCGTGCCCGCGTTTCGGAAGCGGCTCGGGAGGAAGACACGTGTCGTGAGCGGGTTGGTGGACTTGGCGCGGGCTGGGCCCGAGGGGGCGAAGCGGGATGCGTTGGCGGCGGTACTGAACCTCGCGGCGGATAGAGAGACGGTGGCGCGGTTGGTGGAGGGAGGGGCGGTGGCCATGGCGGCGGAGGTGATGGCGGCGATGCCGGAGGAGGGGGTGACGATTCTCGAGGCGGTGGTGAAGAGGGGAGGGCTGGTGGCGGTGGCGGCGGCGTACGCGGGGATCAAGAAGCTTGGGGCGGTGCTGAGGGAGGGATCGGAGAGGGCGCGGGAGAGCGCGGCGGCGACGCTGGTGACCATGTGTCGGAAGGGGGGGTCGGAGATCGTGGCGGAGCTGGCGGCGGTGCCCGGCGTGGAGAGGGTGATTTGGGAGCTGATGGCGGTGGGGAGTGTCAGGGGGCGGCGGAAGGCGGCGACGCTGTTGAGGATTTTGCGGCGGTGGGCGGCGGGACTGGATGGCGGAGAGGCTGAAGGGTTGTCTACAACTACCATGGTCACTTCCTCAACTACTGTGGTTGTTCCAACTTCCACTTCGTTGGCACAGTAA 2094 0.5778 MAISPEAFQTRKRRPSGASFISPKLNDLNLLYSLLQLTDQICTLNLTNTANFLLNRTSSSTIRKTQLLGVVFEDLIRVSNSNPVLFPYSLVLCLEEMHIVLHKVKTLIEDSSNASKFNLLMQIETVADNFHRLTGELSTLLDVFPLQELDLNDDVRELVLLVRKQCSESKPAIGTEQISLRNEVVSVLDRIKNEIVPDQAHLSSIFEKLEIRDASSCRAEIENLEEEIHNRSEEQSKTDLVALIGLVRFAKCVVFGASTLSPQNVTLRRNHSSELVIPADYRCPISLELMRDPVVVATGQTYDRVSIKLWMDSGHNTCPKTGQTLSHTDLIPNRVLRNMIATWCREQRIPFEAEAVAGKINGGVTNKAALEATRMTVSFLVNKLKDNINDPLPVEDTNGVVYELRVLAKTDSDSRACIAEAGAIPLLVRLLSFGGDERNPSLQVNAVTTILNLSILEANKTRIMETDGALNGVAEVLIAGATWEAKANAAATVFSLSGVPAFRKRLGRKTRVVSGLVDLARAGPEGAKRDALAAVLNLAADRETVARLVEGGAVAMAAEVMAAMPEEGVTILEAVVKRGGLVAVAAAYAGIKKLGAVLREGSERARESAAATLVTMCRKGGSEIVAELAAVPGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGEAEGLSTTTMVTSSTTVVVPTSTSLAQ 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2491 697 Coils Coil 214 234 - -
Ssu4g2491 697 SMART arm_5 411 455 IPR000225 GO:0005515
Ssu4g2491 697 SMART arm_5 486 540 IPR000225 GO:0005515
Ssu4g2491 697 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Ssu4g2491 697 Gene3D - 365 587 IPR011989 -
Ssu4g2491 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 468 IPR000225 GO:0005515
Ssu4g2491 697 PANTHER U BOX DOMAIN-CONTAINING 13 679 - -
Ssu4g2491 697 Pfam Armadillo/beta-catenin-like repeat 412 454 IPR000225 GO:0005515
Ssu4g2491 697 Pfam U-box domain 277 348 IPR003613 GO:0004842|GO:0016567
Ssu4g2491 697 SUPERFAMILY ARM repeat 380 660 IPR016024 -
Ssu4g2491 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 354 IPR013083 -
Ssu4g2491 697 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 13 679 - -
Ssu4g2491 697 CDD RING-Ubox_PUB 281 323 IPR045210 -
Ssu4g2491 697 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Ssu4g2491 697 SUPERFAMILY RING/U-box 274 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2491 Ssu-Chr4 62710154 62712247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2491 11 695 U-box Gene Family AT5G01830 54.651 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2491 - - gmx:100805405 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2491 4 62710154 62712247 Ssu4g2491 4 62710154 62712247 ECH