Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2490 ATGCTCGAGCGACAAAACGGTGCCGTCACAGGCACAGAGATAGCGACAGAGACAGAGAAGGACTCGTCGTCGACGACAAAGGACGAGGCAGTGGCGGGTGTCGTTTTGCTCGGGAAATACGAGCTTGTCAAGCTACTAGGCGTGGGCGCGTCCGCGAAGGTGTACCACGCGCGGAACGTGCACACGTCGCAGAGCGTGGCGGTGAAGGCCGTCAGCAAGCGCAGGCTGGAGAAAAACGGTTACGCGGCGCACGTGGAGCGCGAGGTCGCTATCATGCGCCGGCTGCGCCACCCTCACACCGTGAGGCTCTTCGAGGTCCTCGCCACGAGGACCAAGATCTACTTCGTGATGGAGTTCGCCGCGGGCGGCGAACTCCTTCACGTGGTCGACGGCGAGGGCCGCCTCACGGAGGACCTGAGCCGGCGGTACTTCCGCCAGCTCGTGTCCGCCGTCAGGCACTGCCACTCGCGCGGCGTGTACCACCGCGATTTAAAACTCGACAACCTCCTCGTGGACGAAAGCATGGACCTCAAGGTCTCCGACTTCGGGCTGGGCGCGTTGCGCGGCCAGATCCGACGCGACGGCATGTTACACACCGTGTGCGGGACCCCTGCTTACGTGGCGCCCGAGATTCTCGCGAGGAAGGGTTACCACGGTGCCAGCGTGGACGTTTGGTCGTGCGGCGTCGTTCTGTTCGCGCTCAACGCCGGGTACTTACCGTTTAATGATTACAATGTTACGGTTCTTTATAGGAAGATCTGCAGGGGACAGTTCCGGTTCCCGAGGTGGATGTCGAGTGAACTCAAGAATCTCGTGACGAGGTTGTTGGACACAAATCCCGAGACGAGGATCACGTTGGATGAGGTCACGCGACACCCGTGGTTCAACCGGGGCGGGTACACGGATGCTTTGACCCGACCCGAGGAATGGGGAGAGAAGTCGGAGAACCGGGTCGTGACTAAGAGGTTGAATGCGTTTGACTTGATATCTTTTTCGCTCGGAGTGGATATGTCGGGTTTGTTTACCGACCCGGAGTATTCAGATTCAACGGAATGGTTCGTGACGCCGGAGACGCCGGAGACGGTTATGAGGACGGTGAGGGAGGTGGTGGAGACAGAAAACATGACGGTGAAGAAGGATGAGATTGGCTGCGGGGGAGTGAGGATAGAGGGGTTGGATGGCAATTTTGTGATTGTGGTTGGGTTTTACCGGTTAACGAATGAGTTGGTTATAGTTGAGGtgaagaggagagaaaggagagagggaAGTGGGGAACGGTTTTGGAGAGATTCGCTAAGGCCAATACTTATTGAATTGGCAACTCATTAA 1329 0.5681 MLERQNGAVTGTEIATETEKDSSSTTKDEAVAGVVLLGKYELVKLLGVGASAKVYHARNVHTSQSVAVKAVSKRRLEKNGYAAHVEREVAIMRRLRHPHTVRLFEVLATRTKIYFVMEFAAGGELLHVVDGEGRLTEDLSRRYFRQLVSAVRHCHSRGVYHRDLKLDNLLVDESMDLKVSDFGLGALRGQIRRDGMLHTVCGTPAYVAPEILARKGYHGASVDVWSCGVVLFALNAGYLPFNDYNVTVLYRKICRGQFRFPRWMSSELKNLVTRLLDTNPETRITLDEVTRHPWFNRGGYTDALTRPEEWGEKSENRVVTKRLNAFDLISFSLGVDMSGLFTDPEYSDSTEWFVTPETPETVMRTVREVVETENMTVKKDEIGCGGVRIEGLDGNFVIVVGFYRLTNELVIVEVKRRERREGSGERFWRDSLRPILIELATH 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2490 442 SUPERFAMILY Protein kinase-like (PK-like) 36 325 IPR011009 -
Ssu4g2490 442 Gene3D Phosphorylase Kinase; domain 1 36 121 - -
Ssu4g2490 442 Pfam NAF domain 322 379 IPR004041 GO:0007165
Ssu4g2490 442 MobiDBLite consensus disorder prediction 1 25 - -
Ssu4g2490 442 SMART serkin_6 40 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2490 442 ProSiteProfiles NAF domain profile. 318 342 IPR018451 GO:0007165
Ssu4g2490 442 Gene3D Kinase associated domain 1, KA1 318 440 - -
Ssu4g2490 442 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Ssu4g2490 442 ProSiteProfiles Protein kinase domain profile. 40 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2490 442 Pfam Protein kinase domain 40 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2490 442 CDD CIPK_C 324 436 - -
Ssu4g2490 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Ssu4g2490 442 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 21 439 - -
Ssu4g2490 442 Gene3D Transferase(Phosphotransferase) domain 1 122 299 - -
Ssu4g2490 442 PANTHER - 21 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2490 Ssu-Chr4 62655122 62656450 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2490 36 439 CBL-interacting serine-threonine protein kinases AT5G01820 56.448 2.63e-156 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu4g2490 Pkinase 1.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2490 - K12761 gmx:100788245 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2490 4 62655122 62656450 Ssu4g2490 4 62655122 62656450 ECH