Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2488 ATGGAGCAGAAAGGGGGCGTGCTTATGCAGCGATATGAGCTAGGGAGACTATTAGGCCAGGGAACCTTTGCAAAGGTCTACCATGCCAGGAACCTCATAACCGGCATGAGTGTGGCCATTAAGATTATTGACAAGGAGAAGATTCTGAAAGTTGGGATGATTGATCAGATTAAGCGTGAAATTTCGGTGATGAGGCTAGTCAGGCATCCACATGTGGTTGAGCTTTACGAGGTAATGGCCAGCAAAACCAAAATCTTCTTTGTCATGGAGTATGTAAAGGGTGGTGAGCTCTTCAACAAGGTGTCCAAAGGGAAGCTCAAGCAGGACGACGCTAGGAGGTATTTTCAGCAATTGATCAGTGCTGTTGACTACTGCCACAGCAGAGGTGTGTGCCACCGTGATCTGAAGCCAGAAAATCTTCTACTGGATGAGAATGAGAATTTGAAGGTCTCAGATTTCGGGTTAAGCGCCCTTGCCGAAACCAAGCACCAAGATGGATTGCTCCATACCACTTGTGGCACCCCTGCCTATGTTGCTCCGGAGGTGATAAACAGAAGGGGTTATGATGGAGCCAAAGCTGATATATGGTCATGTGGGGTGATCTTGTATGTGCTGTTGGCTGGTTTTCTTCCATTTAGAGACTCCAACCTGATGGAGATGTACAGGAAGATTGGCAAGGGAGAATTCAAGTTTCCTAACTGGTTTGCACCGGATGTTCGCAGATTGTTGTTGAGAATCTTGGATCCAAACCCCAAGACCAGGATATCCATGGCCAAGATTATGGAAAATTCTTGGTTCAAAAAGGGGTTGGAGAAGCCCACCATTACTCAGAACAAAGACAGCGAGCTAGCTCCTCTGGATGCTGATGGGGTGTTTGGTGCTTGTGAGAATGGAGGTCCTATTGAACCGGCAAAAGACTCTAAACTTTGCAACTTGAATGCTTTTGACATCATCTCCTACTCCTCGGGTTTTGACTTGTCCGGTTTGTTTGAGGAGACCGATCGAAAGAAAGAAGCGCGGTTTACATCTGACAAGCCTGCCTCAATTATCTTCTCCAAGTTGGAAGAGATTTGCGGGCGTCTTCGGCTgaaagtgaagaagaaggatggagGTTTGTTCAAGTTGGAAGGTTCCAAGGGAGGCAGAAAAGGGCCCTTGTGCATTGATGCTGAGATTTTTGAGATCACCCCAGTTTTCCATCTAGTGGAGTTAAAAAAGTCTAGTGGGGATACACTGGAGTTCCAAAAGCTTTTGAAACAGGAAGTGAGGCCTGCACTTAAGGACATTGTTTGGAACTGGCAAGGAGAACCACCACGGCTGTTGCAACATGGAGTGGAGCAGAAAGAAGAACAACCTTCTTGTCCTGGCATATCAGAGGTTGTGCCTCAACCAACTGCTTAA 1401 0.4604 MEQKGGVLMQRYELGRLLGQGTFAKVYHARNLITGMSVAIKIIDKEKILKVGMIDQIKREISVMRLVRHPHVVELYEVMASKTKIFFVMEYVKGGELFNKVSKGKLKQDDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENENLKVSDFGLSALAETKHQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWSCGVILYVLLAGFLPFRDSNLMEMYRKIGKGEFKFPNWFAPDVRRLLLRILDPNPKTRISMAKIMENSWFKKGLEKPTITQNKDSELAPLDADGVFGACENGGPIEPAKDSKLCNLNAFDIISYSSGFDLSGLFEETDRKKEARFTSDKPASIIFSKLEEICGRLRLKVKKKDGGLFKLEGSKGGRKGPLCIDAEIFEITPVFHLVELKKSSGDTLEFQKLLKQEVRPALKDIVWNWQGEPPRLLQHGVEQKEEQPSCPGISEVVPQPTA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2488 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Ssu4g2488 466 CDD CIPK_C 313 427 - -
Ssu4g2488 466 MobiDBLite consensus disorder prediction 443 466 - -
Ssu4g2488 466 SUPERFAMILY Protein kinase-like (PK-like) 8 276 IPR011009 -
Ssu4g2488 466 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Ssu4g2488 466 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 443 - -
Ssu4g2488 466 Pfam NAF domain 311 367 IPR004041 GO:0007165
Ssu4g2488 466 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2488 466 PANTHER - 2 443 - -
Ssu4g2488 466 Gene3D Transferase(Phosphotransferase) domain 1 3 305 - -
Ssu4g2488 466 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2488 466 Gene3D Kinase associated domain 1, KA1 307 432 - -
Ssu4g2488 466 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Ssu4g2488 466 CDD STKc_SnRK3 11 265 - -
Ssu4g2488 466 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2488 Ssu-Chr4 62587916 62589316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2488 1 440 CBL-interacting serine-threonine protein kinases AT5G58380 66.228 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu4g2488 Pkinase 2.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2488 K07198 - gmx:100815651 865.144