Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2479 ATGGCTGGAAGTTCTCGTCAAAGGGTGATTTTTCCTGACTGCAAGCTCAAAATCTGTTTGTTCTTATGTCTTATTGGGATAGTTTCAGCTTCAGATTTAACCTCTTCAGCAACTACTGCCGTGACTTCAGTTGATAATCAGTTAAGCCCCACTTTTTATACTTCAAAGTGTCCCCTGGCCCTTCTTACCATTAAGAAACTAGTAACCGCTGCTGTGTGGAATGAGCCTCGCATGGGTGCATCCTTGCTTCGCCTTCATTTCCATGATTGCTTTGTCCAAGGATGTGATGCATCGGTATTGTTAAACAACACAGCAACTTTCACGGGCGAACAAGGCGCCTTACCCAACGTTAATTCTCTAAGGGGTTTCGATGTCATAGAGAACATAAAAGCTAAACTAGAGATTTTGTGCCCCGGTGTTGTCTCTTGCGCTGACATCCTAGCCGTTGCAGCAAGGGATTCTGTTGTTGCCGTAAGTGCCCACACAATAGGCAGATCCAGGTGTTTACTCTTCCGAACAAGGATTTATAACGAAAGCAATATAGATCCCACGTATGCAAACTTACTGAGAGCCAATTGTCCCGAGACAGGTGGTGATGACAACTTGTCTCCTTTGGACATCACCACCAAGGACATTTTCGACAGTGCCTACTACgggaatttaatttccaaaaaggGTCTTTTGCACTCTGATCAACAGCTCACTAATAGTGGTTCGACGTACTCAAAAGTTCAATATTATGCCACGAACCCGTCACTCTTCAAATCAGATTTTGCTAAGGCCATGGTCAAGATGGGAAACCTCGGCCCACTAACCGGCACACAGGGTCAGATCAGAAAAGTGTGCAGCAGAGTGAATTGA 861 0.4402 MAGSSRQRVIFPDCKLKICLFLCLIGIVSASDLTSSATTAVTSVDNQLSPTFYTSKCPLALLTIKKLVTAAVWNEPRMGASLLRLHFHDCFVQGCDASVLLNNTATFTGEQGALPNVNSLRGFDVIENIKAKLEILCPGVVSCADILAVAARDSVVAVSAHTIGRSRCLLFRTRIYNESNIDPTYANLLRANCPETGGDDNLSPLDITTKDIFDSAYYGNLISKKGLLHSDQQLTNSGSTYSKVQYYATNPSLFKSDFAKAMVKMGNLGPLTGTQGQIRKVCSRVN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2479 286 ProSiteProfiles Plant heme peroxidase family profile. 47 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 PRINTS Haem peroxidase superfamily signature 141 158 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 PRINTS Haem peroxidase superfamily signature 206 221 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 PANTHER PEROXIDASE 72-RELATED 159 286 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 Gene3D - 51 156 - -
Ssu4g2479 286 Gene3D - 266 283 - -
Ssu4g2479 286 PANTHER PEROXIDASE 72-RELATED 41 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 Gene3D Peroxidase, domain 2 157 265 - -
Ssu4g2479 286 SUPERFAMILY Heme-dependent peroxidases 47 286 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 PANTHER PEROXIDASE 70 41 158 - -
Ssu4g2479 286 PANTHER PEROXIDASE 70 159 286 - -
Ssu4g2479 286 PRINTS Plant peroxidase signature 81 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 PRINTS Plant peroxidase signature 57 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 PRINTS Plant peroxidase signature 260 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 PRINTS Plant peroxidase signature 204 219 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 PRINTS Plant peroxidase signature 220 237 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 CDD secretory_peroxidase 47 285 IPR033905 GO:0004601|GO:0042744
Ssu4g2479 286 Pfam Peroxidase 65 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 Pfam Peroxidase 158 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g2479 286 ProSitePatterns Peroxidases active site signature. 79 90 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2479 Ssu-Chr4 62279069 62282509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2479 44 286 Peroxidase AT5G05340 49.164 1.82e-95 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2479 K00430 - twl:119991039 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2479 4 62279069 62282509 Ssu4g2479 4 62279069 62282509 ECH
Ssu4g2479 4 62279069 62282509 Ssu6g2756 6 64032755 64036958 ECH
Ssu4g2479 4 62279069 62282509 Ssu9g1284 9 46668726 46673904 ECH
Ssu3g0996 3 23347677 23365079 Ssu4g2479 4 62279069 62282509 PCT