Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2472 ATGGTAAATGGAAGGCATCGAGAAACcgaaaaccaaaatcaattagAGGAAAGTTTGAGAAGCATGGATTCTAGGCGGCGTAAAAAAGCAGCTATGCAACGCAAGTTGCAACAACTTCGATCGGTTACAAATTCCAGTGCTGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGCTCAAGCAAAAAGTGGATGGATTTAGCTCAGAGCTTGGAACCGCTGAATCATCATTTTCCCAAGACGAACTACCCATGGTCACCGTAGAAACCCTAGAAAGGGGCTTCCTTATTAATGTGTTTTCAGAAAGGAATTGCCCCGGCATGCTTGTGGCAATACTCGACGCCTTCGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTTGAAGCAGTCGGAGGAGAAAGTCAAGAGAACGAAAGCATTGACGCGCAAGTGGTGAAGCAAGCAGTGTTGCAAGCAATCCAAAACATGGACTAA 513 0.4386 MVNGRHRETENQNQLEESLRSMDSRRRKKAAMQRKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVDGFSSELGTAESSFSQDELPMVTVETLERGFLINVFSERNCPGMLVAILDAFEELGLDVLDARVSCEDTFQLEAVGGESQENESIDAQVVKQAVLQAIQNMD 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2472 170 Coils Coil 61 81 - -
Ssu4g2472 170 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 22 170 - -
Ssu4g2472 170 MobiDBLite consensus disorder prediction 1 26 - -
Ssu4g2472 170 ProSiteProfiles ACT domain profile. 101 170 IPR002912 -
Ssu4g2472 170 MobiDBLite consensus disorder prediction 1 27 - -
Ssu4g2472 170 Gene3D - 5 87 IPR036638 GO:0046983
Ssu4g2472 170 CDD ACT_UUR-ACR-like 110 166 - -
Ssu4g2472 170 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 22 170 - -
Ssu4g2472 170 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 80 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2472 Ssu-Chr4 62078262 62080018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2472 5 133 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 29.032 5.73e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2472 - - gmx:100499821 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3102 6 70575736 70577236 Ssu4g2472 4 62078262 62080018 ECH
Ssu3g0998 3 23468600 23470234 Ssu4g2472 4 62078262 62080018 ECH
Ssu4g2472 4 62078262 62080018 Ssu6g3102 6 70575736 70577236 ECH
Ssu4g2472 4 62078262 62080018 Ssu4g2472 4 62078262 62080018 ECH
Ssu6g2747 6 63905283 63907253 Ssu4g2472 4 62078262 62080018 ECH
Ssu9g1278 9 46503771 46504963 Ssu4g2472 4 62078262 62080018 ECH
Ssu4g2472 4 62078262 62080018 Ssu6g2747 6 63905283 63907253 ECH
Ssu4g2472 4 62078262 62080018 Ssu9g1278 9 46503771 46504963 ECH