Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2466 ATGCAACCAAGAAGTGTTGGAGATGGTTTACGTGTTAGTGCCTCAAGTACGCCTAGTAATTCAAGTGGTGGATCAGAACAAGATGACATAGACTCATTTCGTGATGTTTATATATGGGGAAAGGTTTTGGCAAATGCGGTTTCACCTAATGGGATTGGAACTGAAATCCCTTCTAAGACAGATATATTGATTCCTAAGCGTATAGAGCCAAATATTCTTGATGTTCGTCACATTGCAAATGGTGCACATCACATTGCTATAGTAACTAGGCAGGGACAAGTTTTTACTTGGGGAGAAGAATCAGGGGGGAGACTTGGTCATGGAACTGATAAAGATTTTGGTCATCCACATCTAGTTGAGTTTCTAGAAGGTACTAATTTTGACTTTGTTGCATGTGGAGAGTATCATACAGGTGCTATATCTAAATCTTATGAACTTTATATGTGGGGTGATGGGACACATAATGTTGGACTTCTTGGCAATGGTAGCGAGGCTAGCCATTGGACACCAAAAATGGTGAATggccctttggaaggacttcaAGTTGTGTCTGTTGCATGTGGCACATGGCATTCAGCATTGGCGACTTCAGATGGAAAACTTTTTACCTTTGGTGATGGGGCATTTGGTGTCTTGGGCCACGGAGATCAAGAGAGTGTGTTGTATCCAAAGGAGGTACAATTATTAAGTGGACTAAAGACTATAAAGGTTGCATGTGGAGTTTGGCACACAGCAGCTATTGTAGAGGTTACATTTCAATCTGGTTCAAATACTTCATCATGGAAGCTTTTCACATGGGGTGATGGTGACAAATATCGTTTGGGTCATGGAAACAAGGAAACATACCTTCAGCCCACACGTGTCTCTCCACTTATGGAATATAATTTCCACCAAGTAGCATGTGGGCACACAATGACTGTTGCTCTCACTACAACTGGTCATGTCTTTACCATGGGAGGCACAGAAAATGGTCAATTAGGAAATCCGATGTCAATTGGAAAAATACCTACTCTAGTCCAAGACAAGTTGCTTGGTGAGTTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGTTGTTTTGACAGCGAAAAGTGAACTATATACATGGGGAATGGGTGCTAATGGAAGATTGGGACATGGAGACATAGAAGATAGAAAATCTCCTACATTGGTGATAGCCTTAAAAGAtaggaatataaaaaatatctcatGTGGCTCTAATTTTACATCATGTATTTGCATCCATAAATCAATCTCTGGAACTGATCAATCTGATTGCTTTGGTTGTCGACAAGCATTTGGTTTAACAAGAAAAAGgcataattgtcataattgtggATTGGTCTTCTGCCATGCTTGTAGTTCTAGAAAGGCATTGAAAGCAGCATTGACTCCAACACCAGAAAAACCTCATCGTGTGTGTGATAATTGTTATGTTAAGCTTAAAGTTGTTAATGATAATGGAGCTTCGAAGTTAGATAAAAAAGCTACTCCATCTGATTATTCCATAAATGGAAAGGAAAGATTAGGCCAAGGAGCAATAAGGTCTACAAGAACTGTCTTGTCTCCCATCACTGAACCAGTAAAATACCTCGAGATAAAGAATAGTAATCCTGAAAGCAATGATGATTCTACTTTCTTTGTACGAGCTTCTCAAGTTCCATCTCTTTTACAATTGAAAGATATTTCATTTCCAAGTTCACTTAGTTCTTATCAAAGTGTTTTAAGGCCTACTATACCTCCCAGTCCACCACAAACTCCACCACCACCGACCAATTCTGGGGCCATATCCACATACCCAAGAAGACAAAACCCTCCACGCACTGCCGGTCCTAGATTTTCTGGAGGATTTAGCGGCAATTTAAGAAGGACAAACGAGCTTTTGAATCAAGAAGTTTCAAAGTTACAAAAACaaATTCAAAGTTTGAAGCAAAGAAGTGACATGCAAGATGTGGAAATTACGAAGCTTAACAAAAAGGCTACAGAAGCTACTGCCTTAGCTGCAGTGGAATTTTCTAATCATAGAGTAACAAAAGAATTTGTTGAATCTACTATATATCAGTTAAAGGGAATGATTGAGAAGCTGCCAGAAGAAATTTcagaaagtaaaaatttaagaaccGTGCTTACTCGAGCTGaagaatttcttaaagaaattttaGGATCTGAAATATCTTCACCATCAAAGTTGGAGTTTAAGCAGCAAAACGCACCTCAAATACCTACCTTGGATAATGGCTCTTCCCAACTACAAAAAAATAGAGTTGAAGAAAATGTGGATGTTGCAGGAGTCAATCCTTGTCAGGATGAAGGAAATTTTCTTGAAGAAAGTACTAAATCAAAGTTAGAGCCTAAGCAACAAAATGCACCTGATATACTTGCCTTAAATGGTGATTCTTccaaacaacacaaacaaagaCTAGAAGAAAATATGGATGCTACAAGAGCCAATCCTTGTCAGGATGAAGGAAATTTCCttgaagaaaacaataaatcaaGGTTAGAGTCTAGGCATcaaaatatacctaatatacCTACTTCAGATACTAACACTTCCAAAATGCAAGAACATGGACTAGAAGAAAACATTGATACCATAGAAGTTGACCCTTATCAAGATAGAGGAAATTTccttgaagaaaataatggacCAAAATTGGAGATTGAGTACCAAAATGCACCTAATATGCTTGCTTCAATTAGTGATGTTTCTGAATTACTAGAGGATAGACTAGAGGAAAATGTTGAGGTTGCAGGAGTTGATCAATCTCAGGTAGAAGGACATGTCTTTCAAAAAAGTAATGGGTCATTTGTATCTAGTGTTGGAGAAATAGTGCCTCCACAAAACTTATACAATGGTTTAAGATCATTAGACTCTTCAAGACTCAAGAGACAGGGAGAAATAcaagttattgaaaaatttgAACATGGTGTTTATGTGACACTCATGTTACGATCTGATggtaccaaaatttttaaacgAGTTAAATTCAGGTAA 3000 0.3587 MQPRSVGDGLRVSASSTPSNSSGGSEQDDIDSFRDVYIWGKVLANAVSPNGIGTEIPSKTDILIPKRIEPNILDVRHIANGAHHIAIVTRQGQVFTWGEESGGRLGHGTDKDFGHPHLVEFLEGTNFDFVACGEYHTGAISKSYELYMWGDGTHNVGLLGNGSEASHWTPKMVNGPLEGLQVVSVACGTWHSALATSDGKLFTFGDGAFGVLGHGDQESVLYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNTSSWKLFTWGDGDKYRLGHGNKETYLQPTRVSPLMEYNFHQVACGHTMTVALTTTGHVFTMGGTENGQLGNPMSIGKIPTLVQDKLLGEFVEEISCGAHHVVVLTAKSELYTWGMGANGRLGHGDIEDRKSPTLVIALKDRNIKNISCGSNFTSCICIHKSISGTDQSDCFGCRQAFGLTRKRHNCHNCGLVFCHACSSRKALKAALTPTPEKPHRVCDNCYVKLKVVNDNGASKLDKKATPSDYSINGKERLGQGAIRSTRTVLSPITEPVKYLEIKNSNPESNDDSTFFVRASQVPSLLQLKDISFPSSLSSYQSVLRPTIPPSPPQTPPPPTNSGAISTYPRRQNPPRTAGPRFSGGFSGNLRRTNELLNQEVSKLQKQIQSLKQRSDMQDVEITKLNKKATEATALAAVEFSNHRVTKEFVESTIYQLKGMIEKLPEEISESKNLRTVLTRAEEFLKEILGSEISSPSKLEFKQQNAPQIPTLDNGSSQLQKNRVEENVDVAGVNPCQDEGNFLEESTKSKLEPKQQNAPDILALNGDSSKQHKQRLEENMDATRANPCQDEGNFLEENNKSRLESRHQNIPNIPTSDTNTSKMQEHGLEENIDTIEVDPYQDRGNFLEENNGPKLEIEYQNAPNMLASISDVSELLEDRLEENVEVAGVDQSQVEGHVFQKSNGSFVSSVGEIVPPQNLYNGLRSLDSSRLKRQGEIQVIEKFEHGVYVTLMLRSDGTKIFKRVKFR 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2466 999 ProSiteProfiles BRX domain profile. 969 999 IPR013591 -
Ssu4g2466 999 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 237 247 IPR000408 -
Ssu4g2466 999 Pfam Transcription factor regulating root and shoot growth via Pin3 970 998 IPR013591 -
Ssu4g2466 999 MobiDBLite consensus disorder prediction 1 28 - -
Ssu4g2466 999 MobiDBLite consensus disorder prediction 578 595 - -
Ssu4g2466 999 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 998 - -
Ssu4g2466 999 Gene3D - 12 258 IPR009091 -
Ssu4g2466 999 MobiDBLite consensus disorder prediction 574 622 - -
Ssu4g2466 999 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 365 416 IPR000408 -
Ssu4g2466 999 SUPERFAMILY RCC1/BLIP-II 34 417 IPR009091 -
Ssu4g2466 999 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 144 198 IPR000408 -
Ssu4g2466 999 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 261 312 IPR000408 -
Ssu4g2466 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 494 IPR013083 -
Ssu4g2466 999 Coils Coil 619 653 - -
Ssu4g2466 999 SMART fyve_4 415 484 IPR000306 GO:0046872
Ssu4g2466 999 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 199 250 IPR000408 -
Ssu4g2466 999 MobiDBLite consensus disorder prediction 9 27 - -
Ssu4g2466 999 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 998 - -
Ssu4g2466 999 MobiDBLite consensus disorder prediction 730 749 - -
Ssu4g2466 999 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 92 143 IPR000408 -
Ssu4g2466 999 CDD FYVE_like_SF 427 479 - -
Ssu4g2466 999 PRINTS Chromosome condensation regulator RCC1 signature 185 201 IPR000408 -
Ssu4g2466 999 PRINTS Chromosome condensation regulator RCC1 signature 144 160 IPR000408 -
Ssu4g2466 999 PRINTS Chromosome condensation regulator RCC1 signature 302 320 IPR000408 -
Ssu4g2466 999 PRINTS Chromosome condensation regulator RCC1 signature 360 381 IPR000408 -
Ssu4g2466 999 PRINTS Chromosome condensation regulator RCC1 signature 74 87 IPR000408 -
Ssu4g2466 999 PRINTS Chromosome condensation regulator RCC1 signature 201 215 IPR000408 -
Ssu4g2466 999 Gene3D - 259 418 IPR009091 -
Ssu4g2466 999 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 421 483 IPR017455 -
Ssu4g2466 999 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 313 364 IPR000408 -
Ssu4g2466 999 Pfam FYVE zinc finger 423 482 IPR000306 GO:0046872
Ssu4g2466 999 SUPERFAMILY FYVE/PHD zinc finger 420 487 IPR011011 -
Ssu4g2466 999 Pfam Regulator of chromosome condensation (RCC1) repeat 198 247 IPR000408 -
Ssu4g2466 999 Pfam Regulator of chromosome condensation (RCC1) repeat 366 413 IPR000408 -
Ssu4g2466 999 Pfam Regulator of chromosome condensation (RCC1) repeat 263 309 IPR000408 -
Ssu4g2466 999 Pfam Regulator of chromosome condensation (RCC1) repeat 313 361 IPR000408 -
Ssu4g2466 999 Pfam Regulator of chromosome condensation (RCC1) repeat 92 140 IPR000408 -
Ssu4g2466 999 Pfam Regulator of chromosome condensation (RCC1) repeat 146 194 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2466 Ssu-Chr4 61881097 61884734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2466 382 504 Acyl Lipid Metabolism Gene Families AT4G33240 32.143 6.07e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2466 - - gmx:100798841 1524.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1001 3 23576328 23589433 Ssu4g2466 4 61881097 61884734 PCT