LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g2453	ATGCCTTTCAGTTTCTCTGACCTCCTTTGTACCAACACCAACAATAGCATGACCATGGATGATGATCATTTTGGACTTGAATTTCCCAACTTCAAGTCAGCTCCACCTCTTTCACTACCGTTCTCCCCTTCATCAATCTACCCTTCTTATTCTGAATTCCCACCTGGTTTTGGCCCAACACAATTGAATTCACCCCTCTTTGTTTCTTCTCAAAATGTTCCTGCATCTTACACAACTGAGTCCTCTTCTAGCACGAGCTTCAACATGAGAAACAGTTCAACCGAGGGCCAGCAAggtaaaaaggaagaagagggaaACTACTCTGACCTCTCTTGCCAAACAAAAGCAAACCACGTGCCTCTTTTTAAATCTTCCACAAGCATGTTTCAAGTGCAGGAGCCACTAAAGAAACAGGGCACAATGATATTCAATGAAGCTGCAAAGCAAACAGATTTCTCATCTGAGAGGACAGCAACAAAATCTGAATATCCATCCACTCAGGGCTTCTCCACAGAAATAATGGGCTCAACCAAACCTGAAACACAAAGCACTTCTGCTCGTGGTTCTGTTCAATTTAACTTCACTAATGCTTCTATGTCTATAAGAGAACAAAGGAGATCAGAAGATGGGTACAATTGGAGGAAGTATGGAGAGAAACAAGTGAAAGGAAGTGAAAATCCGCGCAGTTATTACAAGTGCACGCACCCGGGTTGCCCGACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATATTACTGAAATTGTGTACAAGGGAAGTCACAATCATCCCAAGCCTCACTCTACTAGAAGAACTGGTTCTCAATCAATTCATCAAACAACTTCATCCTGCACCAACTCGGGAATTTCTGATCAATCTTTGGGAGAGGAAGATTTTGAGCAAACATCACAAACTAGTTATTCTGGATGGGGTGATGATGACCTTGGACCTGAGGCCAAAAGATGGAAGGGGGAGAATGAAACTGATGGCTATTCCTATTCCTCTGTTGGGGGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACCACAAGTGAAATTGACATACTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAACCCAAACCCAAGGAGCTACTACAAATGCGTAGCCCCAGGTTGTCCAGTGAGAAAGCATGTTGAGCGAGCTGCACATGATATGAAAGCTGTGATTACAACTTATGAAGGGAAACATATCCATGATGTACCTTTAGGACGAGGAAATTCAAGCTATAGTATGAACAAAACTTCTCTAAAcaccacgaccacgaccacgaccaccagcaaTGTAACAGCCCCTGCCCCTATAAGGTCCTCAGCAGTGACTAATTATTCTAACACAGCAAGTTTCAGCAGTTCACTTCATGACACAAAGCTACCAACATCTGCAAGTCAAGAACCTTTTCCAATGGACTTGTTGCTGAGCCCTGGAAGCCTGGGATTTTCGGCTAATGACCCATTCCTTCAGTCTTTTTTGTCAAAGAACTTCTAG	1533	0.4123	MPFSFSDLLCTNTNNSMTMDDDHFGLEFPNFKSAPPLSLPFSPSSIYPSYSEFPPGFGPTQLNSPLFVSSQNVPASYTTESSSSTSFNMRNSSTEGQQGKKEEEGNYSDLSCQTKANHVPLFKSSTSMFQVQEPLKKQGTMIFNEAAKQTDFSSERTATKSEYPSTQGFSTEIMGSTKPETQSTSARGSVQFNFTNASMSIREQRRSEDGYNWRKYGEKQVKGSENPRSYYKCTHPGCPTKKKVERSLEGHITEIVYKGSHNHPKPHSTRRTGSQSIHQTTSSCTNSGISDQSLGEEDFEQTSQTSYSGWGDDDLGPEAKRWKGENETDGYSYSSVGGRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVAPGCPVRKHVERAAHDMKAVITTYEGKHIHDVPLGRGNSSYSMNKTSLNTTTTTTTTSNVTAPAPIRSSAVTNYSNTASFSSSLHDTKLPTSASQEPFPMDLLLSPGSLGFSANDPFLQSFLSKNF	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g2453	510	Gene3D	WRKY domain	344	410	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu4g2453	510	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	13	508	IPR044810	GO:0003700
	Ssu4g2453	510	Pfam	WRKY DNA -binding domain	208	264	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu4g2453	510	Pfam	WRKY DNA -binding domain	358	414	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu4g2453	510	Gene3D	WRKY domain	194	267	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu4g2453	510	SMART	WRKY_cls	357	416	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu4g2453	510	SMART	WRKY_cls	207	265	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu4g2453	510	MobiDBLite	consensus disorder prediction	78	95	-	-
	Ssu4g2453	510	MobiDBLite	consensus disorder prediction	258	336	-	-
	Ssu4g2453	510	SUPERFAMILY	WRKY DNA-binding domain	203	266	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu4g2453	510	ProSiteProfiles	WRKY domain profile.	202	266	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu4g2453	510	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	13	508	-	-
	Ssu4g2453	510	MobiDBLite	consensus disorder prediction	153	186	-	-
	Ssu4g2453	510	MobiDBLite	consensus disorder prediction	78	107	-	-
	Ssu4g2453	510	ProSiteProfiles	WRKY domain profile.	352	417	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu4g2453	510	MobiDBLite	consensus disorder prediction	269	310	-	-
	Ssu4g2453	510	SUPERFAMILY	WRKY DNA-binding domain	349	417	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g2453	Ssu-Chr4	61550237	61553114	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g2453	177	487	WRKY Transcription Factor Family	AT2G38470	51.312	2.33e-103	318

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Ssu4g2453		WRKY	5.9e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g2453	K13424		-	gmx:100127367	809.29

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu4g2453	4	61550237	61553114	Ssu4g2453	4	61550237	61553114	ECH
	Ssu3g1025	3	24099117	24101544	Ssu4g2453	4	61550237	61553114	PCT