Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2447 ATGGCATCAGCTATGGTAACTGGTGCGTTCCTCTCTGCTTTTCTTAACGTTCTTTTCGACAAGATCGCTTCCCCTGAGTTTGTCAACTTGATCCGTGGTGGAAAGAAGCCTGGCAAGTTGCTTCAAGAGGTGGAGGACAAGCTGAAGGTGGTTAAAGTTGTGCTTGATGATGCTGAGAAGAGACAAATCACAGACTCCAATGTCAAGAAGTGGCTTGATGTTCTCAAAGATGCTGTCTACCAGGTTGACGACTTACTGGATGAAGTTTCCACTAAAGCTGCAACTCAAAAGGAGGTAAGCAAgtccttttctctcattttcaacCGGAAGAAGATGGTTAGTATTAGCAAGTTGACAGACATAGTTGGCGAATTAgataatgttttaaaacaaatgaagaGTCTTGATTTGAAAAAGATCTCACTAGAGAACAACGAGCCATGGCAAGCTGAGACAACATCTCTGGAAGATAGATATGGTATATATGGTAGGGATAAAGACAAGGAGGCCATAATGAAGTTGTTGTTAGAGGATAGCACTGATGGTGAAGAAGTGTCTCTGATCCCTATTGTAGGCATGGGTGGGGTTGGAAAAACCACTTTAGCTCGATCTGTGTACAACGATGGGAAGTTGAAGCAGGTATTTGATTTAAAAGCATGGGTTTGTCTTTCtgataattttgatattgtgaAGGTCACGAGAACTATGATAGAGCAAGTTACCCAGGAGCCTTGTAAATTGAATGATCTAGATTCACTTCAACGTGACTTGAAGGACAAGCTGAAAggtaaaaaattcttaattgtcTTGGATGATGTCTGGATCGAGGCATATGATAACtggagaaattttgaaaagccATTTCTAAGTGGGATTAGGGGAAGTAAAATTCTCGTGACAACCCGCAATGAAAATGTAGCAAAGGTAGTCCCTTTCCATACTGTTCAAGTTTATCACCTGGACCAATTGTCAAATGAAGATTGTTGGTTAGTGTTTGCAAACCATGCATTTCCTCCCTCAGAATCAAGTGAGAATAGAAGCACTCTAGAAGAAATTGGAAGGGAGATTGTTAAAAAGTGTAATGGATTGCCTTTAGCAGCACAATCACTTGGAGGTATGTTGAGAAGAAAGCATGATACTGGAGATTGGAATAATATACTTGAAAGTGACATTTGGGAACTTCCTGAAGGTCTCTGTAAAATTATTCCAGCATTGAGAATTAGTTATCATTATCTCCCTCCACATTTAAAACGGTGCTTTGTTTACTGTTCATTGTACCCCAAGGATTATGAATTTGAGAAAGatgaattaattttgttgtggATGGCTGAAGATCTCTTGAAGCCAACAAGGAAAGGAAAGATGCTAGAAGAAGTTGGCTAcgaatattttgattatttagttTCGACATCATTTTTTCAACATTCAGGTAGTGGGACTCGGGGTAATAATTTTGTGATGCATGACCTCATGCACGATCTAGCAGCATCCCTTGGTGAAGAATTCTATTTGAGATCAGAAGAACTGGGAAAAGAAACTAAGATTGATGTCAAGACTCGTCATTTGTCGTTTACCAAATTCAGTGATCCAGTCTCGGACGACTTTAAAGCTTTTGGTAGAGTAAAATTTTTGAGAACTTTCTTGCCGATTGGTTTTGAAGTTTCTCCCTTCAACAATGAAAATGCACCATGTATTATAATGTCGAAGCTTAAGTACTTGAGAGTTTTATCATTCCATGACTTTGAAAGTCTGGATGTTTTGCCTGATTCAATAGGTGAGTTGATCCATTTACGCTATTTAGATCTCTCTTGA 1812 0.3681 MASAMVTGAFLSAFLNVLFDKIASPEFVNLIRGGKKPGKLLQEVEDKLKVVKVVLDDAEKRQITDSNVKKWLDVLKDAVYQVDDLLDEVSTKAATQKEVSKSFSLIFNRKKMVSISKLTDIVGELDNVLKQMKSLDLKKISLENNEPWQAETTSLEDRYGIYGRDKDKEAIMKLLLEDSTDGEEVSLIPIVGMGGVGKTTLARSVYNDGKLKQVFDLKAWVCLSDNFDIVKVTRTMIEQVTQEPCKLNDLDSLQRDLKDKLKGKKFLIVLDDVWIEAYDNWRNFEKPFLSGIRGSKILVTTRNENVAKVVPFHTVQVYHLDQLSNEDCWLVFANHAFPPSESSENRSTLEEIGREIVKKCNGLPLAAQSLGGMLRRKHDTGDWNNILESDIWELPEGLCKIIPALRISYHYLPPHLKRCFVYCSLYPKDYEFEKDELILLWMAEDLLKPTRKGKMLEEVGYEYFDYLVSTSFFQHSGSGTRGNNFVMHDLMHDLAASLGEEFYLRSEELGKETKIDVKTRHLSFTKFSDPVSDDFKAFGRVKFLRTFLPIGFEVSPFNNENAPCIIMSKLKYLRVLSFHDFESLDVLPDSIGELIHLRYLDLS 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2447 603 Gene3D - 143 316 IPR027417 -
Ssu4g2447 603 Coils Coil 41 61 - -
Ssu4g2447 603 Pfam NB-ARC domain 165 388 IPR002182 GO:0043531
Ssu4g2447 603 Pfam Rx N-terminal domain 10 101 IPR041118 -
Ssu4g2447 603 PANTHER DISEASE RESISTANCE PROTEIN RP 35 601 IPR044974 GO:0006952
Ssu4g2447 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 423 IPR027417 -
Ssu4g2447 603 PANTHER OS05G0414200 PROTEIN 35 601 - -
Ssu4g2447 603 Gene3D - 16 134 - -
Ssu4g2447 603 Gene3D - 322 407 IPR042197 -
Ssu4g2447 603 PRINTS Disease resistance protein signature 187 202 - -
Ssu4g2447 603 PRINTS Disease resistance protein signature 592 603 - -
Ssu4g2447 603 PRINTS Disease resistance protein signature 360 374 - -
Ssu4g2447 603 PRINTS Disease resistance protein signature 260 274 - -
Ssu4g2447 603 Coils Coil 125 145 - -
Ssu4g2447 603 Gene3D - 408 497 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2447 Ssu-Chr4 61479981 61481792 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2447 157 377 WRKY Transcription Factor Family AT5G45050 25.439 2.92e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2447 - - vun:114165446 871.307