Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2443 ATGGGAGGTTGTTGCAGCTGTCATGTTTCATTTGTAGGAAAGGTGCATGATGTGGAATGTGAATGTAACCATAACAATGATGGTGCATGTGAACATGGCGGGGCCCGGGTCATGTTAAGGGGGTCCTCTAAGTTTGTGTCAATGTACAGCCAAAAGGGTTCAAAAGGAGTTAATCAAGATGCATTGACAGTTTGGGAGGACTTCATTGGGAAAAAGGACATGATCTTTTGTGGCGTGTTTGATGGCCATGGTCCTCTAGGACACAAGTTTGCACAGTGTATACGTGACAATCTACCCTCAAAACTCTCAGCAGCAATTAAAGAGTCACAACAAAAGGTTTGCAAAGACTGTGATGCTAATGCCACAGATGGAGGCAGTCATGGTGATGTCTATGTTGAGGATAACCAAAACATGTCCTTTGCTTCATGGGAAGGAACCTTTATGAGGTGCTTCAGTGAAATGGATGAAGACCTTGCTAAGAACATTGACACTGATGGCTTTCGTGGTGGTAGCACTGCTGTAACTGTAATCAAACAGGGTGACCAATTGATAGTTGGCAATTTGGGGGATTCTCGTGCAGTTCTTTGCAGAAGAGCACATGACAACCAACTTATTCCTACTCAACTCACTGTTGACTTGACCCCAGATACTCCAAGTGAAGCTTTAAGAATCATTAATTGTGGAGGTAGAATTTTTGCTGCACAAGAAGATCCAGGTGTAAACAGAGTATGGATGCCTGAAGGGGACTGCCCTGGACTGGCTATGGCCAGAGCCTTTGGAAATTTTTGCCTGAAAGACTATGGTGTCACCTCAGTGCCTGACGTATCATACAGAAAACTTACCAAGCAGGATGAGTTTGTGGTTTTGGCTTCTGATGGGGTATGGGATGTGCTAACAAACAGTGAAGTAATAAACATAGTTGCTTCAGCACCAAAAAGGTCTATGGCAGCCAAATTGTTAGTAAATCGTGCTGTTCAGGCTTGGAGATATAAGTATGGTTTCAAGGTTGATGATTGTACAGCCTTGTGTTTGTTCCTGAAGGATCAGCCTGTTTTAACCCATTCCTGA 1068 0.4363 MGGCCSCHVSFVGKVHDVECECNHNNDGACEHGGARVMLRGSSKFVSMYSQKGSKGVNQDALTVWEDFIGKKDMIFCGVFDGHGPLGHKFAQCIRDNLPSKLSAAIKESQQKVCKDCDANATDGGSHGDVYVEDNQNMSFASWEGTFMRCFSEMDEDLAKNIDTDGFRGGSTAVTVIKQGDQLIVGNLGDSRAVLCRRAHDNQLIPTQLTVDLTPDTPSEALRIINCGGRIFAAQEDPGVNRVWMPEGDCPGLAMARAFGNFCLKDYGVTSVPDVSYRKLTKQDEFVVLASDGVWDVLTNSEVINIVASAPKRSMAAKLLVNRAVQAWRYKYGFKVDDCTALCLFLKDQPVLTHS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2443 355 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1 355 - -
Ssu4g2443 355 CDD PP2Cc 45 346 IPR001932 -
Ssu4g2443 355 Pfam Protein phosphatase 2C 117 325 IPR001932 -
Ssu4g2443 355 SMART PP2C_4 36 344 IPR001932 -
Ssu4g2443 355 Gene3D - 40 349 IPR036457 -
Ssu4g2443 355 SUPERFAMILY PP2C-like 41 348 IPR036457 -
Ssu4g2443 355 ProSiteProfiles PPM-type phosphatase domain profile. 45 346 IPR001932 -
Ssu4g2443 355 PANTHER ALPHABET, ISOFORM E-RELATED 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2443 Ssu-Chr4 61372866 61375652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2443 1 350 PP2C-type Phosphatase Gene Family AT5G01700 47.107 1.40e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2443 - - vra:106755106 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2443 4 61372866 61375652 Ssu4g2443 4 61372866 61375652 ECH
Ssu3g1032 3 24197966 24200801 Ssu4g2443 4 61372866 61375652 PCT