Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2436 ATGCCACTTCCCTTGTTCATGGGAAACAACACTTGCCATGTCAAAGATGTCCACACAGATCCTCTTCAGCTTAACCTCTCTTATGCTTCAAGGGGTGATAGGAGGAGGAAATGGAGGAACAATCACAAAGGTGGTACTGGTTTCATTTGCTTAGCCTTTTTACTGCTTCTTTTGCAAGCTTTGGCTTCCATCATTCAACCTGTTTCAGGCCACTTGTGGGATGGGGTGGTTGTGACTCAAGCTGATTTTCAAGCTCTGAGGGCTATTAAGAATGAGCTGGTTGACTCCAAAGGGGTTCTGAGGAGCTGGAATGACAGTGGTGTAGGTGCTTGTTCAGGAGGGTGGGCAGGAATCAAGTGTGTGAATGGGGAAGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTAGGTGGACAAATCTCAAACAAAATTGGCCAACTTCAATCTCTTAGGAAGCTCAGTCTCCATGACAATGCTCTTGCTGGTCCAGTCCCTTGGTCACTTGGCCTCCTTCCTAACCTCAGAGGACTTTATCTCTTCAATAACAAACTTTCAGGTTCTATCCCTCCTTCCCTTGGCAATTGTCCAATGCTTCAGTCTCTTGACATTAGCAACAATGCCCTCACAGGTAAAATCCCTCCCAGTTTAGCAAACTCCACCAGGATATTTAGGATCAATTTGAGCTTCAACTCACTTTCTGGATCCATTGCTAGCAGTTTCACTATGTCTCTTTCTCTAACCATTCTTTCCCTCCAACACAACAACCTCTCCGGTTCTATCCCAGATTCTTGGGGTGGAATGGGAAAGAAGAAAGCTTCCCAGCTTCAAGTTTTGACCCTTGATCACAATCTCATTTCTGGAACCATCCCAGCTTCTCTAGGCAAGCTAGCTTTACTTGAAAATGTTTCCTTGAGTCATAACCAGATTGTAGGGCCTATTCCAAGTGAGCTAGGTGCACTTTCCAGGCTTCAAATTCTTGATCTATCAAACAATGCCATCAATGGCAGCCTTCCTGCTAGCTTCTCTAACCTCTCTTCTCTTGTTTCATTAAATCTTGAGAGCAACCAACTTGAAAACCATATTCCAGATTCTTTGGACAGGTTGCACAACCTTTCTGTGCTTAACCTGAAGAACAATAAGCTTGATGGCCAAATCCCACCAACAATTGGGAACATCTCAACCATTAGCCAGATTGATTTCtctgaaaataaattagttggAGAAATTCCAGATTCCCTTACCAAACTTGCAAATCTCAGTTCATTCAATGTCTCTTACAACAACCTATCTGGTCCTGTCCCGTCTCTACTTTCCAAAAGATTCAATGCTAGCTCTTTTGCAGGGAATCTTGAGCTATGTGGGTACATCAGTTCAAAACCATGCCCTTCACCCCCACCTCATAATCTTCCAGCTCAATCACCACAGGCTCCTTCCAAGTCACATCACCGCAAATTAAGCACTAAGGACATAATCCTCATAGTGGCAGGTGTTCTCCTGTTGATTCTGTTATTAGTGTGCTGCTTTTTGCTGTGTTGTTTGATCAGGAGAAGAGCTGCTTCAAGCAGGAAGAGTGGCAAGACTGCTAAGGCTGCAGCATCTGCTAGGAGTGTCGAGAAAGGTGTCTCAGCTGGTGGTGAGGTTGAATCAGGAGGTGAAGCTGGTGGAAAATTAGTTCACTTTGATGGCCCTTTTGTGTTTACTGCTGATGATCTTTTGTGTGCAACTGCGGAGATAATGGGAAAAAGTGCATATGGAACAGCATACAAAGCAACACTGGAAGATGGTAACCAAGTTGCTGTGAAAAGGTTGAGGGAAAAAACAACTAAAGGGCAGAAGGAGTTTGAAACTGAGGTTGCTGCACTTGGCAAAATCAGACACCCAAATCTCCTAGCACTTAGAGCCTACTATTTAGGACCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACCAGAGGAAGCCTAGCATCATTCCTTCACGCTCGTGGGCCTGAAATTGTTATTGAATGGCCAACAAGGATGAAGATAGCCATTGGAGTCACTCGCGGTTTGAGCAACCTCCATAACCAGGAGAACATTGTACACGGGAACCTTACATCCAGCAATATACTATTGGATGAGCAAACAGAAGCCCATATAACagattttggtctctcaagGCTAATGACTACTTCTGCCAACACCAACATCATTGCCACTGCAGGAAGTCTTGGCTACAATGCACCAGAGCTTTCAAAGACCAAGAAGCCTAACACGAAGACCGATGTGTACAGCCTTGGTGTCATTATGTTGGAGCTCCTAACCGGAAAACCACCCGGGGAGCCAACCAATGGCATGGACTTGCCTCAGTGGGTGGCATCCATAGTGAAGGAAGAGTGGACTAATGAAGTGTTTGATTTGGAGCTCATGAGGGATGCACCAGCCATAGGGGATGAATTGCTTAATACTTTGAAGTTGGCACTGCATTGTGTGGATCCATCTCCTGCTGCTAGGCCAGAAGTTCAGCAAGTTCTACAGCAATTGGAGGAGATCAAACCAGACTTGGCTGCAGGGGATGATGGAGCTAGTAAGGTCCAAACAACTGAGTAA 2586 0.4447 MPLPLFMGNNTCHVKDVHTDPLQLNLSYASRGDRRRKWRNNHKGGTGFICLAFLLLLLQALASIIQPVSGHLWDGVVVTQADFQALRAIKNELVDSKGVLRSWNDSGVGACSGGWAGIKCVNGEVIAIQLPWRGLGGQISNKIGQLQSLRKLSLHDNALAGPVPWSLGLLPNLRGLYLFNNKLSGSIPPSLGNCPMLQSLDISNNALTGKIPPSLANSTRIFRINLSFNSLSGSIASSFTMSLSLTILSLQHNNLSGSIPDSWGGMGKKKASQLQVLTLDHNLISGTIPASLGKLALLENVSLSHNQIVGPIPSELGALSRLQILDLSNNAINGSLPASFSNLSSLVSLNLESNQLENHIPDSLDRLHNLSVLNLKNNKLDGQIPPTIGNISTISQIDFSENKLVGEIPDSLTKLANLSSFNVSYNNLSGPVPSLLSKRFNASSFAGNLELCGYISSKPCPSPPPHNLPAQSPQAPSKSHHRKLSTKDIILIVAGVLLLILLLVCCFLLCCLIRRRAASSRKSGKTAKAAASARSVEKGVSAGGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKTTKGQKEFETEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTRGSLASFLHARGPEIVIEWPTRMKIAIGVTRGLSNLHNQENIVHGNLTSSNILLDEQTEAHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPNTKTDVYSLGVIMLELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPAIGDELLNTLKLALHCVDPSPAARPEVQQVLQQLEEIKPDLAAGDDGASKVQTTE 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2436 861 CDD STKc_IRAK 578 843 - -
Ssu4g2436 861 Pfam Leucine Rich Repeat 197 216 IPR001611 GO:0005515
Ssu4g2436 861 Pfam Leucine rich repeat 320 380 IPR001611 GO:0005515
Ssu4g2436 861 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 35 852 - -
Ssu4g2436 861 Pfam Leucine rich repeat N-terminal domain 81 120 IPR013210 -
Ssu4g2436 861 Gene3D Ribonuclease Inhibitor 78 219 IPR032675 -
Ssu4g2436 861 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 35 852 - -
Ssu4g2436 861 SUPERFAMILY Protein kinase-like (PK-like) 576 845 IPR011009 -
Ssu4g2436 861 Pfam Protein tyrosine and serine/threonine kinase 576 840 IPR001245 GO:0004672|GO:0006468
Ssu4g2436 861 ProSiteProfiles Protein kinase domain profile. 572 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2436 861 Gene3D Ribonuclease Inhibitor 336 461 IPR032675 -
Ssu4g2436 861 SUPERFAMILY L domain-like 119 454 - -
Ssu4g2436 861 Gene3D Ribonuclease Inhibitor 220 335 IPR032675 -
Ssu4g2436 861 Gene3D Transferase(Phosphotransferase) domain 1 650 855 - -
Ssu4g2436 861 SMART LRR_typ_2 319 342 IPR003591 -
Ssu4g2436 861 SMART LRR_typ_2 146 169 IPR003591 -
Ssu4g2436 861 SMART LRR_typ_2 170 194 IPR003591 -
Ssu4g2436 861 SMART LRR_typ_2 367 391 IPR003591 -
Ssu4g2436 861 SMART LRR_typ_2 343 366 IPR003591 -
Ssu4g2436 861 SMART LRR_typ_2 415 438 IPR003591 -
Ssu4g2436 861 Gene3D Phosphorylase Kinase; domain 1 578 649 - -
Ssu4g2436 861 PRINTS Leucine-rich repeat signature 197 210 - -
Ssu4g2436 861 PRINTS Leucine-rich repeat signature 319 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2436 Ssu-Chr4 60949339 60952836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2436 71 845 Receptor kinase-like Gene Family AT3G51740 69.872 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu4g2436 PK_Tyr_Ser-Thr 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2436 - - gmx:100799290 1382.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3083 6 70339512 70342456 Ssu4g2436 4 60949339 60952836 ECH
Ssu4g2436 4 60949339 60952836 Ssu4g2436 4 60949339 60952836 ECH