Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2434 ATGGCGGAATTAGCAGTGTCCATAGCCCGAGAGAAACTGCTTCCACTAATAAGAGATGAAGCGAATCTGCTTTGGGACATGCCCAAAGAATTTGCTGACATAAAAGACGAACTAGAATACATTCAAGCCTTCCTCAAGGATGCAGATAGAAGGGCTGCAGACGAAGGAGACGACATGAAAGAGAGAATCAGAACATGGGTGAAACAGTTGAGGGAAGCTTCTTTTCGCATAGAAGATGTCATTGACGAATACATGATCTATGTGGAACAACAGCCTCATGATCCTGGATGTACAGCTTTACTCTGTgagtttattcattttattgaaACTTTGATGCCTCGTCATCGAATAGCGTCAGAGATTCAGCAGATTAAGTCATTTGTTCATGGAATCAAGCAAAAAAGTACAGATTATCGCTTCCAAACCCAACCTTCTTCTGAACAAGGACAGAGCAGTCATAGAGGTAGCCAAAGTGTCCAATGGCATGACCCTCGAATGGCTTCTCGTTACCTTGAAGAAGCTGAAGTTGTTGGCATTGAAGGCCCAAGAGATGAATTGATTGATTGGTTAGTAGAGGGACCAGCAGAGCGCATTGTCATCTCTGTGGTAGGAATGGGAGGGCTAGGAAAAACCACTCTTGTCAACAGAGTTTTTAACAGCCAGAAGGTGATTGGACACTTTGATTCCCATGCATGGATCACAGTGTCTCAATCCTACACTGTGGAAGGGTTGATGAGAGACTTGCTGAAGAAGTTATGCAAGGAAAAAAGGGAGGCTCCTCCTCAAGATATTTCTGAAATGGATCGAGATTCATTGATTGATGAAGTGAGAAACTATTTGCAACAAAAGAGGTACGTTGTCGTTTTGGATGATATATGGAATCTAGAACTTTGGGGTCAGATTGAAAATGCCatgtttgataataaaaatggaAGTAGAATATTAATTACAACTAGGAAGAGGGATGTTGTAGTCTCTTGTAAGAGCACTCCTTTTGATCAGGTGCATGAGATGACATTTTTAACCTTAGAAAAATCTCTGGAACTCTTCTGCAAGAAGGCATTCCGATTTGACAACAATGGATATTGTCCAGAAGATCTCATGGATACTTCTTctgaaattgttaaaaaatgtaaggGTTTACCACTAGCAATTGTGGCTATTGGTGGTCTTTTATCGGGCAAAGAAAAGACTACATTTGAATGGGAAAAAATTAGGCAGGGTCTAAGTTCAGAGCTGGAGAAAAATCACCATTTAATTGGCATAACAAAGATTTTAGGTTTCAGTTATGATGATTTGCCATACTATCTCAAAACATGCTTATTGTATTTTGGAATATATCCTGAAGATTATGAAGTTAAATCAACAAGACTGATTCGGCAGTGGACAGCTGAAGGATTTGTAaaagatgaagaaggaaaaacatTAGAGGACATTGCACAACAATATTTAACAGAGTTGATTGGTAGAAGTTTAGTGCAAGTGTCTTCATTTACCATAGATGGAAAAGCTAGGAGTTGTCGTGTTCATGACCTGTTACACGATATGATTCTCAGAAAATTCAAGGATTTAAGTTTTTGTCAGCATATTAGTAGAGAAGATGAGTCAATGTCAAGAGCACTGCATTCTTTGAAAAAGCTCCAATTTTGGCAAATACCCCAACTCAAAACAGTACCTCTTGGCATCCAACACTTGAAAAAACTTGAAGTTTTCGATATATATCATATGTCAGCTGAGTTCAAGAAGTGCATTGCTCCTGATGAAGGTCCAGAGAACCCAATCATCCAGCATGTGCCCCTTGTAAGAATTACTACCAGCAGCCTCAAAGAAGGAACAAAAACTCACATTATTCGTCACTTAAGGCAATAG 1869 0.3826 MAELAVSIAREKLLPLIRDEANLLWDMPKEFADIKDELEYIQAFLKDADRRAADEGDDMKERIRTWVKQLREASFRIEDVIDEYMIYVEQQPHDPGCTALLCEFIHFIETLMPRHRIASEIQQIKSFVHGIKQKSTDYRFQTQPSSEQGQSSHRGSQSVQWHDPRMASRYLEEAEVVGIEGPRDELIDWLVEGPAERIVISVVGMGGLGKTTLVNRVFNSQKVIGHFDSHAWITVSQSYTVEGLMRDLLKKLCKEKREAPPQDISEMDRDSLIDEVRNYLQQKRYVVVLDDIWNLELWGQIENAMFDNKNGSRILITTRKRDVVVSCKSTPFDQVHEMTFLTLEKSLELFCKKAFRFDNNGYCPEDLMDTSSEIVKKCKGLPLAIVAIGGLLSGKEKTTFEWEKIRQGLSSELEKNHHLIGITKILGFSYDDLPYYLKTCLLYFGIYPEDYEVKSTRLIRQWTAEGFVKDEEGKTLEDIAQQYLTELIGRSLVQVSSFTIDGKARSCRVHDLLHDMILRKFKDLSFCQHISREDESMSRALHSLKKLQFWQIPQLKTVPLGIQHLKKLEVFDIYHMSAEFKKCIAPDEGPENPIIQHVPLVRITTSSLKEGTKTHIIRHLRQ 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2434 622 Gene3D - 4 118 - -
Ssu4g2434 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 444 IPR027417 -
Ssu4g2434 622 Pfam NB-ARC domain 182 432 IPR002182 GO:0043531
Ssu4g2434 622 CDD RX-CC_like 2 132 IPR038005 -
Ssu4g2434 622 Pfam Rx N-terminal domain 5 94 IPR041118 -
Ssu4g2434 622 Gene3D - 341 429 IPR042197 -
Ssu4g2434 622 PANTHER DISEASE RESISTANCE PROTEIN RP 30 529 IPR044974 GO:0006952
Ssu4g2434 622 PANTHER - 30 529 - -
Ssu4g2434 622 MobiDBLite consensus disorder prediction 138 162 - -
Ssu4g2434 622 Gene3D - 163 331 IPR027417 -
Ssu4g2434 622 Gene3D - 430 521 IPR036388 -
Ssu4g2434 622 PRINTS Disease resistance protein signature 199 214 - -
Ssu4g2434 622 PRINTS Disease resistance protein signature 279 293 - -
Ssu4g2434 622 PRINTS Disease resistance protein signature 563 579 - -
Ssu4g2434 622 PRINTS Disease resistance protein signature 378 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2434 Ssu-Chr4 60914201 60917038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2434 175 397 WRKY Transcription Factor Family AT5G45050 27.232 5.81e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2434 K13457 - gmx:100819372 870.537