Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2432 ATGGACGACCTTGGAGGGTACATGGCCAAAATCTTCTTTATGTTGAGgGATGAAGCTGAGCTTCTTGATGAAATTGTCAATTGTATTTTGATGAAGTTGAATGCTATGCATGCGCACCCAGTTAACTCAAAAGGACTTATTGGAATAGAAAAACCAATTGCACATATAAAGTCATTGTTACACCAAGGATCAGATGATGTACGTGCTATTGGAATTTGGAGCATGGGTGGTATTGGGAAGACAACCATTGCAAAAGAAGTATTTCACAGGCTGTGTTCTGAATTTGATGGTTATTGTTTTTTGGCAAATGTTAGGGAAGAGTCACAAAGGCAtggaataatttctttaaaggaaaaacttttctcTGCAATTTTACAAGAAGATTTGAAAATTGACACAACAAATGAATTGCCTGGTTATGTTAAGATGAGACTTGGTTATATGAAGGTTCTTATAGTTCTTGATGACGTGAATGATTCAGATCAACTAGAAATTTTAGTTGGAGCTTGTGATTGGTTTGGACCAGGTAGTAGAATAATTATAACAGGCAGAGATAAGCAAGTGTTTGCTAATGAGGGGACTGAGGCCATTAGAAGCATAAGGAGACACTTGTCAGCGGTTACAAAGCTGAAGCTTAGCCCTCTCGTATTTGAGAAAATTAGCAAATTGCTATTCATTGATTTTCACAGTGAAAATGATCATGATGGCTTGGATATTCTTCCTCAAGGACTTGAATATTTGCCAAGTGAGCTGAGATACCTTCGTTGGATGAATTACCCGCTGAAATCATTACCCGAGAAGTTTTCTCCAGAAAACCTCGTTGTTTTGGACCTGTCATATAGCCGACTGGAAACACTTTGGCAAGGGGAACGGaATTTGGTGaatttaaaacaagttaaaCTTTATGGCTCCAAATTTCTGAAGGAGTTGCCTGATTTTTCAAAAGCCATCAATCTGGAACTGCTGGACATCCGTTTCTGCACTCAGTTAACCACTGTACATGCATCCATTTTCACTCTCAAGAAACTTGAGAAATTGGTTTTGGTGGAGAATGAAGtccaatga 1065 0.369 MDDLGGYMAKIFFMLRDEAELLDEIVNCILMKLNAMHAHPVNSKGLIGIEKPIAHIKSLLHQGSDDVRAIGIWSMGGIGKTTIAKEVFHRLCSEFDGYCFLANVREESQRHGIISLKEKLFSAILQEDLKIDTTNELPGYVKMRLGYMKVLIVLDDVNDSDQLEILVGACDWFGPGSRIIITGRDKQVFANEGTEAIRSIRRHLSAVTKLKLSPLVFEKISKLLFIDFHSENDHDGLDILPQGLEYLPSELRYLRWMNYPLKSLPEKFSPENLVVLDLSYSRLETLWQGERNLVNLKQVKLYGSKFLKELPDFSKAINLELLDIRFCTQLTTVHASIFTLKKLEKLVLVENEVQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2432 354 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 205 348 IPR044974 GO:0006952
Ssu4g2432 354 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 198 IPR044974 GO:0006952
Ssu4g2432 354 Pfam NB-ARC domain 51 192 IPR002182 GO:0043531
Ssu4g2432 354 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 205 348 - -
Ssu4g2432 354 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 10 198 - -
Ssu4g2432 354 SUPERFAMILY L domain-like 249 352 - -
Ssu4g2432 354 Gene3D Ribonuclease Inhibitor 194 353 IPR032675 -
Ssu4g2432 354 Gene3D - 24 193 IPR027417 -
Ssu4g2432 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 285 IPR027417 -
Ssu4g2432 354 PRINTS Disease resistance protein signature 314 330 - -
Ssu4g2432 354 PRINTS Disease resistance protein signature 144 158 - -
Ssu4g2432 354 PRINTS Disease resistance protein signature 69 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2432 Ssu-Chr4 60783549 60790679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2432 175 343 WRKY Transcription Factor Family AT4G12020 39.227 3.00e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2432 - - ccaj:109791596 261.536