Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2429 atgacactctcttccttcctcgTTCTCatatttcactttttcttcACCCGCGCACTTTCTCTCTCCTCGGACGGCCTCGCCCTTCTCGCTCTAAAATCCGCCGTCGACCAACCCTCCGCCGCGTTCTCCGACTGGAACGACGGCGACCTCACCCCGTGCGCCTGGTCGGGAATCTCCTGCGCGAACATCTCCGGCCAGCCGGAGCCGCGCGTCGTCGGAATCTCCCTCGCCGGAAAGTCCCTCTCCGGCTACCTCCCCTCGGAGCTCGGCACGCTCCGCTTCCTCCGCCGTCTCAACCTCCACGACAACGCCTTCTCCGGCGTCCTCCCTCCCACCCTCGCCAACGCCACCGCGCTCCACAGCCTCTTCCTCCACCGCAACAACCTCTCCGGCCTCCTCCCCCCCACCCTCTGCACCCTCCCGCGCCTCCAGAACCTCGACCTCTCCGACAACGCCTTCTCCGGCCACATCCCCGGCGACCTCAGAAACTGCAAGAACCTCCAGCGCCTCGTCCTCGCCGGCAACGAATTCTCCGGCGAGATCCCCGCCGGCGTGTGGCCGGCGCTCAATAACCTCCTCCAGCTCGACCTCTCCGCGAACGAGTTCACCGGCTCGATCCCTGACGACCTCGGAACCCTAATCTCCCTCTCCGGCACGCTGAACCTCTCCTTCAACCACCTCTCCGGTAGGGTTTCGGCGTCGCTAGGGAAATTACCGGCAACAGTTAGCTTCGACCTCAGAAACAATAACCTCAGCGGCGAAATCCCCCAAACGGGGTCGTTTTCGAACCAGGGCCCCACCGCGTTCCTCGGAAACCCTAACTTATGCGGGTTTCCGCTTCGAAAATCGTGTTCCGGTTCGAACCGGGATTTTTCGCCCGGTTCGGACCGGGTTACCCGGTCTAAGGGGCTGAGCCCgggattaattattttgatctcGGTGGCCGATGCCGCTGTTGTGGCCTTTATAGGGCTTGTGATTGTTTATGTTTATTGGAAGAGAAAGGATGATGAGAACGCGTGTAGCTGCATTGGGAAGAGCAAGTTTGGTGAAGAGAAAgggaatgtgtgtgtgtgtggtgggTTTTCATGTGTGAGTGGGGTGAAGAGTGAGGATGAGGAGGAGGAGAATGAGGTGGAGGGGGTTGAGGAGGGGCAAGGGGAATTGGTGAGGATCGATAAGGGTTTGAGTTTTGAGCTTGATGAGTTGTTGAGGGCTTCGGCTTACGTGTTGGGGAAGAGTGGGTTGGGGATTGTGTATAAGGTGGTGTTGGGGAATGGGGTGCCGGTGGCGGTGAGGAGGTTGGGGGAGGGTGGGGAACAGAGGTATAAGGAGTTTGCCGCGGAGGTTATGGCCATTGGGAAGGTGAAGCACCCTAATGTTGTGAGGTTGAGGGCGTACTATTGGGCGCATGATGAGAAGCTTCTCATCAGTGATTTCATCTCCAACGGCAATTTGGCACATGCCCTCAGAGGTAGAAACGGCCAACCATCTACAAATCTTTCGTGGTCCGCCAGACTGAGAATCGCCAAAGGAACAGCCAGGGGCTTGGCCTATCTCCACGAATGCAGTCCAAGAAAATTCGTCCACGGCGACGTCAAACCCTCCAACATCCTACTTGACAACGACCTCCAGCCCTACATTTCCGATTTCGGCCTCAACCGCCTCATCAGCATCACCGGCAACAACCCCTCCACCGGTGGATTCATGGGTGGAGCTCTTCCTTACATGAAGTCATCACAGAAAGAGAGAACCAACAACAATTACAAGGCCCCCGAGGCTCGTGTCCCTGGCAGCGGACCCACCCAGAAATGGGACGTGTACTCATTCGGGGTTGTGTTGCTTGAAATATTAACCGGGAGGTCACCGGAGTCATCTCCCACCACATCAACCTCCATGGAAGTCCCTGACTTGGTAAGGTGGGTGAGGAAAGGATTCGATCAAGAAAGCCCGTTATCTGAAATGGTTGATCCATCGCTGCTGCAAGAGGTGCGCGTTAAGAAAGAGGTGCTGGCCGTGTTTCATGTGGCACTGGCTTGCACCGAAGGAGACCCTGAGGCTCGGCCTAGGATGAAAACTGTCTCTGAAAATCTTGACAAGGTTGGAACTTAA 2112 0.5516 MTLSSFLVLIFHFFFTRALSLSSDGLALLALKSAVDQPSAAFSDWNDGDLTPCAWSGISCANISGQPEPRVVGISLAGKSLSGYLPSELGTLRFLRRLNLHDNAFSGVLPPTLANATALHSLFLHRNNLSGLLPPTLCTLPRLQNLDLSDNAFSGHIPGDLRNCKNLQRLVLAGNEFSGEIPAGVWPALNNLLQLDLSANEFTGSIPDDLGTLISLSGTLNLSFNHLSGRVSASLGKLPATVSFDLRNNNLSGEIPQTGSFSNQGPTAFLGNPNLCGFPLRKSCSGSNRDFSPGSDRVTRSKGLSPGLIILISVADAAVVAFIGLVIVYVYWKRKDDENACSCIGKSKFGEEKGNVCVCGGFSCVSGVKSEDEEEENEVEGVEEGQGELVRIDKGLSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVMAIGKVKHPNVVRLRAYYWAHDEKLLISDFISNGNLAHALRGRNGQPSTNLSWSARLRIAKGTARGLAYLHECSPRKFVHGDVKPSNILLDNDLQPYISDFGLNRLISITGNNPSTGGFMGGALPYMKSSQKERTNNNYKAPEARVPGSGPTQKWDVYSFGVVLLEILTGRSPESSPTTSTSMEVPDLVRWVRKGFDQESPLSEMVDPSLLQEVRVKKEVLAVFHVALACTEGDPEARPRMKTVSENLDKVGT 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2429 703 Pfam Leucine rich repeat 95 152 IPR001611 GO:0005515
Ssu4g2429 703 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 703 - -
Ssu4g2429 703 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 6 703 - -
Ssu4g2429 703 SUPERFAMILY L domain-like 22 281 - -
Ssu4g2429 703 Gene3D Ribonuclease Inhibitor 186 286 IPR032675 -
Ssu4g2429 703 SUPERFAMILY Protein kinase-like (PK-like) 410 696 IPR011009 -
Ssu4g2429 703 Gene3D Transferase(Phosphotransferase) domain 1 481 703 - -
Ssu4g2429 703 CDD STKc_IRAK 411 700 - -
Ssu4g2429 703 Pfam DNA binding protein S1FA 300 352 IPR006779 GO:0003677|GO:0005634|GO:0006355
Ssu4g2429 703 Gene3D Ribonuclease Inhibitor 21 185 IPR032675 -
Ssu4g2429 703 ProSiteProfiles Protein kinase domain profile. 405 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2429 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Ssu4g2429 703 Pfam Protein kinase domain 410 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2429 703 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Ssu4g2429 703 SMART serkin_6 409 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2429 703 Gene3D Phosphorylase Kinase; domain 1 397 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2429 Ssu-Chr4 60743079 60748319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2429 18 701 Receptor kinase-like Gene Family AT1G67510 67.893 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu4g2429 Pkinase 1.5e-31 CL0016
TF S1Fa-like Ssu4g2429 Pkinase 1.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2429 - - var:108346287 1219.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1047 3 24510558 24514925 Ssu4g2429 4 60743079 60748319 PCT