Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2420 ATGGCTAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTTGCACCCAAGCCATCATCTGGACCCCACAAGTCAAGGGAGTGCCTGCCTTTGATCCTCATCCTGCGAAACAGACTAAAGTATGCTCTAACATATAGAGAAGTTATTGCCATCTTGATGCAGCACCATGTTCTTGTTGATGGCAAGGTTAGGACAGACAAGACATATCCTGCTGGATTCATGGATGTTGTTCTCCACGCTGTAAGGGATGAGGAGTCAAAGTTTAAGCTCTGTAAGGTTCGATCTGTTCAATTTGGACAGAAGGGCATCCCCTATTTGAACACATACGATGGACGCACCATCCGCTATCCTGACCCACTAATCAAGGCTAATGACACCATCAAACTGGACCTTGAAAGCAACAAGATCACCGATTTCATCAAATTTGATGTGGGGAACGTTGTTATGGTTACGGGTGGAAGGAACAGAGGTCGAGTTGGTGTCATCAAGAACCGGGAAAAGCACAAGGGAAGCTTTGAGACCATCCACGTTCAGGATGCAACTGGGCATGAGTTCGCAACTCGCATGGGTAATGTCTTCATTATTGGCAAAGGGACAAAGCCTTGGGTGTCTCTTCCCAAAGGCCGGGGTATCAAGTTGTCTATCATTGAGGAGGCTAGAAAGAGGCTTGCCGCTCAACATGAAACAGCTGCCTAA 735 0.4707 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQHHVLVDGKVRTDKTYPAGFMDVVLHAVRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFIIGKGTKPWVSLPKGRGIKLSIIEEARKRLAAQHETAA 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2420 244 Pfam S4 domain 47 90 IPR002942 GO:0003723
Ssu4g2420 244 Gene3D - 1 116 IPR036986 GO:0003723
Ssu4g2420 244 SMART kow_9 154 181 IPR005824 -
Ssu4g2420 244 Pfam KOW motif 157 190 IPR005824 -
Ssu4g2420 244 CDD S4 51 90 - -
Ssu4g2420 244 PIRSF RPS4a_RPS4e 90 221 IPR000876 GO:0003735|GO:0005840|GO:0006412
Ssu4g2420 244 PIRSF RPS4a_RPS4e 1 91 IPR000876 GO:0003735|GO:0005840|GO:0006412
Ssu4g2420 244 PANTHER 40S RIBOSOMAL PROTEIN S4 201 244 - -
Ssu4g2420 244 CDD KOW_RPS4 155 209 IPR041982 -
Ssu4g2420 244 PANTHER 40S RIBOSOMAL PROTEIN S4 2 200 - -
Ssu4g2420 244 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Ssu4g2420 244 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 201 244 IPR000876 GO:0003735|GO:0005840|GO:0006412
Ssu4g2420 244 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Ssu4g2420 244 Gene3D - 155 225 IPR014722 -
Ssu4g2420 244 Pfam 40S ribosomal protein S4 C-terminus 192 239 IPR032277 -
Ssu4g2420 244 ProSiteProfiles S4 RNA-binding domain profile. 42 106 - -
Ssu4g2420 244 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 200 IPR000876 GO:0003735|GO:0005840|GO:0006412
Ssu4g2420 244 Pfam Ribosomal family S4e 90 149 IPR013845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2420 Ssu-Chr4 60427305 60429994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2420 1 240 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 83.077 8.26e-164 451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3072 6 70156230 70158381 Ssu4g2420 4 60427305 60429994 ECH
Ssu4g2420 4 60427305 60429994 Ssu6g3072 6 70156230 70158381 ECH
Ssu4g2420 4 60427305 60429994 Ssu4g2420 4 60427305 60429994 ECH