Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2415 ATGGCTCCAAAACCTCTTTTTGGTCTCCTCATCTTTCTCACTCTCCTTGTTGCTTCCACTGCTTTTTCCTTCCAATTCCATGGCTTCAATAACAGTGAAAGCAATCTCACCCTTGAAGGGGAGTCTAACATTGTCAAACCCCAAGGCATACTTGAGCTCACtaaaagaataaacaatatttttggcCATGCATTCTATAACAAACCCATCAaagtatttgagaaaacaaattcTTCAGTGGTCCAACCAAAAGTTTCTTCCTTCAGTACATGCTTTGTTTTCTCAATTGTGTCACCAAGCTCTGGCCCTGGTGGCTTTGGTCTTGCCTTCACCATAGCTCCCTCAACCCAATTCCCACAAGCTGAAGGTGGCCATTTTCTTGGTCTTTTCAACTCTTCTAATGATATGAACACCTCAAATCACATCTTGGTGGTTGAATTTGATACAGTGAATGGCTACAAAGGTGACACTGACACTGAAGGAAACCATGTTGGGGTAAACTTAAATGGCATGTTCTCAAATACATCTGCCGCTGCAGCTTACTTCGAAGAAGGCACGCGTGCAAAGCAGGAAGACTTCAGCATGGAGAAGGCTGATGCTGTTTGTGCTTGGATTGAATATGATGGTGAAACAGAAATCTTGAATGTCACAATAACCCCTTTAAAAGTACCAAAACCAAGCAAGCCACTTATATCCGAGGTCATTGACATCAAGTCTGTTATGAAGGAAAGCATGTTTTTTGGTTTCTCTGCATCAACAGGTAAGAGGAAAGCAAGCTCCCATTATATTCTTGGATGGAGCTTTTCAGTGAATGGGGTTGCTCCTCCACTCAATTTTTCACTCCTTCCAAAGCCACCACCAAAGGAGAAAGGTCCATCCTCTTTTCCTTGGGTCAAGATTGTAATTGGCACCTTGTCTGCTTTGACCTTTACCTTGTTGTGCCTTTTGCTTTTTGTGACACTCTATAAGAGGTATATGAGATTTGAAACTCTTGAGGACTGGGAAATGGATTGTCCTCATAGGTTCAGCTATAGAGATCTCCACATAGCAACAAAGGGGTTTATAGAGAGCCAGCTAATTGGAGTTGGAGGCTTTGGTTCTGTGTACAAAGGTGTGTTACCTAGCACAGGAACTGAGGTTGCTGTTAAAAGGATCATGCGTAGTCCATTGCAAGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGATTGAGACACAAGAATTTGGTCAATCTTCAAGGGTGGTGCAAGCACAAGAACGATCTACTCTTAATTTATGATTACATTCCAAATGGGGGCCTTGATTCTCTCCTATTCAATAGAAATTTTGCTTTAGATTGGGACCAGAGATTCAATATTCTCAAAGGTGTAGCTGCAGGGCTGTTGTATCTTCATGAAGAGTGGGAGCAAGTGGTGATCCATAGGGATGTGAAATCTAGCAATATTCTAATAGACGGGGACTTCAATGCTCGTTTGGGTGACTTTGGACTAGCAAGGCTTTATAGTCATGATCAAGTGTCACACACAACAAGTGTGGTTGGCACCATAGGGTATATTGCACCAGAGTTAACTAGGACAGGAAAAGCATCTACAAGCTCTGATGTGTATGCATTTGGGGTCCTACTCCTTGAAGTGGTTGCTGGAAGAAGACCTGTTGGCTCATCAGGTCAGTTTCTCTTGGTGGATTGGGTTCTTGAAAATTGCCAACTGGGTCAGATTCTTGAAGTAGTTGATCCTAAGCTAGATTCAGTTTATGATGAGGAGGAAGTGGAGTTGGTTCTGAAATTGGGTCTCTTATGCACTCAATATAGAGCTGATTATAGACCTTCTATGAAACAAGTGACTAGGTACCTAAACTTTGATGACCCTCTTCCTGATATCTCTGACTGGAGACACTTTGATTCTCAAAGCAGCACAACAAACTTAGCTTTCTTAGAAGTCATGCCTACGGGTAACACTGCATCCTCTCACAGTTTATCATCCATTGGCAGGAGTACAATGTCAATAGAAACTGGTAGATAA 2028 0.4157 MAPKPLFGLLIFLTLLVASTAFSFQFHGFNNSESNLTLEGESNIVKPQGILELTKRINNIFGHAFYNKPIKVFEKTNSSVVQPKVSSFSTCFVFSIVSPSSGPGGFGLAFTIAPSTQFPQAEGGHFLGLFNSSNDMNTSNHILVVEFDTVNGYKGDTDTEGNHVGVNLNGMFSNTSAAAAYFEEGTRAKQEDFSMEKADAVCAWIEYDGETEILNVTITPLKVPKPSKPLISEVIDIKSVMKESMFFGFSASTGKRKASSHYILGWSFSVNGVAPPLNFSLLPKPPPKEKGPSSFPWVKIVIGTLSALTFTLLCLLLFVTLYKRYMRFETLEDWEMDCPHRFSYRDLHIATKGFIESQLIGVGGFGSVYKGVLPSTGTEVAVKRIMRSPLQGMREFAAEIESLGRLRHKNLVNLQGWCKHKNDLLLIYDYIPNGGLDSLLFNRNFALDWDQRFNILKGVAAGLLYLHEEWEQVVIHRDVKSSNILIDGDFNARLGDFGLARLYSHDQVSHTTSVVGTIGYIAPELTRTGKASTSSDVYAFGVLLLEVVAGRRPVGSSGQFLLVDWVLENCQLGQILEVVDPKLDSVYDEEEVELVLKLGLLCTQYRADYRPSMKQVTRYLNFDDPLPDISDWRHFDSQSSTTNLAFLEVMPTGNTASSHSLSSIGRSTMSIETGR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2415 675 Pfam Protein kinase domain 356 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2415 675 Gene3D Phosphorylase Kinase; domain 1 339 430 - -
Ssu4g2415 675 PANTHER - 10 666 - -
Ssu4g2415 675 ProSiteProfiles Protein kinase domain profile. 354 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2415 675 CDD lectin_legume_LecRK_Arcelin_ConA 22 272 IPR001220 GO:0030246
Ssu4g2415 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 287 IPR013320 -
Ssu4g2415 675 Gene3D Transferase(Phosphotransferase) domain 1 431 632 - -
Ssu4g2415 675 MobiDBLite consensus disorder prediction 654 675 - -
Ssu4g2415 675 CDD STKc_IRAK 360 621 - -
Ssu4g2415 675 SMART serkin_6 354 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2415 675 Pfam Legume lectin domain 23 280 IPR001220 GO:0030246
Ssu4g2415 675 SUPERFAMILY Protein kinase-like (PK-like) 337 630 IPR011009 -
Ssu4g2415 675 ProSitePatterns Protein kinases ATP-binding region signature. 360 383 IPR017441 GO:0005524
Ssu4g2415 675 Gene3D - 20 276 - -
Ssu4g2415 675 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 10 666 - -
Ssu4g2415 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2415 Ssu-Chr4 60214371 60216398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2415 14 637 Receptor kinase-like Gene Family AT3G08870 52.283 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu4g2415 Pkinase 8.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2415 - - gmx:100792854 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2415 4 60214371 60216398 Ssu4g2415 4 60214371 60216398 ECH