Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2412 ATGGGAGAAAACCGTGTCTCCCAATGTTCCAAGACAAGCCGTTCCAACGTTGATGAAGACGAGTGTGAAAGCCAGGGCAATGAAGATGAAAGTAAGCAAAACAACAATGGAGGAAGCTCGAGTAACAGCACAGTGGAAGAGAGTGAGAAAAAGATAAGGCCTTATGTTAGATCCAAGTTGCCGAGGCTTCGGTGGACATCTGATCTTCATCTTCGCTTTCTTCACGCGGTTCAACGACTTGGAGGACAAGAGAGAGCAACACCAAAATTGGTTCTTCAATTGATGAATATCAAAGGTTTAAGTATTGCCCATGTCAAGAGTCATTTACAGATGTTTAGGAGCAAAAACGTGGATGACCGAAATCAAGTATTTGCCGATCATAATAATCTTGTTGAAATTGgtgacaaaaatatttataatcttagCCAGCTTTCCATGCTTCAAGGGTATAATCCGAGTCAAAGTTCATCCTACAATTACACCAATAATTATCCAAGTTATAGATTTGGGGATGCTTCTTTTGGTGTCTATGAAAAATTGTTACATAGACCTTTAGATTGGTCTAAAGAAATTTCTCAGGCAGGTTCTTCCATCTTTAATGAACAATCAACAAGTAACATCCGTGAACCAAAAGATGAGTTTCTTTCATTTGGTGCTTATGAATCTCTATGCACACGCACGAGATTTAGCCATGTTGATCACACGCCACCAATAAATACGCAACAAAGAGCACAAAATCTCATGCCTATAAACCCAGCAACAAATCCACCAGAATTGAATATATTGAAAAGGAAGGCTTCAGAGACTGCACTTGATTTGGATCTATCACTAAAACTAAACTCAAAGATGGATGCTGAAGGAACCTTGGAGGACCATGAAGTTGATAGCAAACTATCACTCTCATTGAGCTCTCAATCCTACTCCTCTAATCTTGGCAGCAGGTTGAAGGAACCACAAGATCGATGTGAGGAACACGGGAAAAGGGCCAGTACTCTAGATCTGAGTAAATGA 1011 0.3956 MGENRVSQCSKTSRSNVDEDECESQGNEDESKQNNNGGSSSNSTVEESEKKIRPYVRSKLPRLRWTSDLHLRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMFRSKNVDDRNQVFADHNNLVEIGDKNIYNLSQLSMLQGYNPSQSSSYNYTNNYPSYRFGDASFGVYEKLLHRPLDWSKEISQAGSSIFNEQSTSNIREPKDEFLSFGAYESLCTRTRFSHVDHTPPINTQQRAQNLMPINPATNPPELNILKRKASETALDLDLSLKLNSKMDAEGTLEDHEVDSKLSLSLSSQSYSSNLGSRLKEPQDRCEEHGKRASTLDLSK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2412 336 PANTHER - 7 198 - -
Ssu4g2412 336 MobiDBLite consensus disorder prediction 316 336 - -
Ssu4g2412 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 198 IPR044848 GO:0003700
Ssu4g2412 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 117 IPR017930 -
Ssu4g2412 336 PANTHER - 188 335 - -
Ssu4g2412 336 MobiDBLite consensus disorder prediction 307 336 - -
Ssu4g2412 336 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Ssu4g2412 336 Gene3D - 60 117 - -
Ssu4g2412 336 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 61 115 IPR006447 GO:0003677
Ssu4g2412 336 MobiDBLite consensus disorder prediction 1 53 - -
Ssu4g2412 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 188 335 IPR044848 GO:0003700
Ssu4g2412 336 MobiDBLite consensus disorder prediction 29 45 - -
Ssu4g2412 336 Pfam Myb-like DNA-binding domain 63 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2412 Ssu-Chr4 60085133 60086657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2412 27 118 G2-like Transcription Factor Family AT2G42660 59.783 2.09e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu4g2412 Myb_DNA-binding 3.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2412 - - gmx:102660246 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1068 3 25025425 25026976 Ssu4g2412 4 60085133 60086657 ECH
Ssu4g2412 4 60085133 60086657 Ssu4g2412 4 60085133 60086657 ECH