Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2410 ATGGCTTTTGTCCCACTTTGGCTCATGTTTTCCTACACTGTTGGGGCCTTTAGTCTTTGGGGTGGTGGCTTTCTCTACCATTGGGGAGCCATTGATTACTCTGGCGGCTATGTCATCCATCTTTCCTCTGGAATCGCTGGCTTCACTGCCGCTTACTGGGTGGGGCCAAGGTTGAAGAGTGACAGGGAGAGGTTCCCACCAAACAACGTGCTGCTTATGCTTGCGGGTGCTGGGTTGCTGTGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCCAACATTGACTCTTCCATTGCTGTACTCAACACTAACATATGTGCTGCCACTAGCCTCCTTGTATGGACCTCTCTCGATGTCATCTTTTTCGGCAAGCCTTCGGTGGTTGGAGCTGTTCAGGGCATGATGACTGGACTTGTTTGCATCACCCCAGGAGCAGGGCTTGTGCAATCTTGGGCGGCTATAGTGATGGGAATACTATCAGGGAGCATTCCATGGGTGACCATGATGATCCTCCACAAGAAGTCAAGCCTTCTACAGAAGGTAGATGACACCCTTGGAGTGTTTCACACACATGCCGTGGCTGGCCTATTGGGTGGCCTCCTCACAGGTCTCTTAGCAGAACCTGAGCTTTGTAGACTCATATTGCCCGTGACCAACTCAAGGGGTGCCTTCTatggtggtagcggtggtgtTCAGTTTTTGAAGCAATTGGTGGCAGCATTTTTCATCACTGGATGGAACTTGGTCTCCACCACGCTGATTCTTCTAGCCATACAGTTGTTCATACCCTTGAGGATGCCGAACGAGATGCTCGAGATCGGCGACGACGCTGTCCACGGCGAAGAAGCTTATGCCCTTTGGGGTGATGGCGAAAAATATGATACAACCAGGCATGGATCCTCAAGAGTGGACAAAACTTCAGCAACGCCCGATGTTAATGGAGCAAGGGGTGTGACCATAGATCTATGA 978 0.501 MAFVPLWLMFSYTVGAFSLWGGGFLYHWGAIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIDSSIAVLNTNICAATSLLVWTSLDVIFFGKPSVVGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPELCRLILPVTNSRGAFYGGSGGVQFLKQLVAAFFITGWNLVSTTLILLAIQLFIPLRMPNEMLEIGDDAVHGEEAYALWGDGEKYDTTRHGSSRVDKTSATPDVNGARGVTIDL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2410 325 ProSitePatterns Ammonium transporters signature. 32 57 IPR018047 GO:0008519|GO:0016020|GO:0072488
Ssu4g2410 325 PANTHER AMMONIUM TRANSPORTER 1 322 - -
Ssu4g2410 325 PANTHER AMMONIUM TRANSPORTER MEP2 1 322 IPR001905 GO:0008519|GO:0016020|GO:0072488
Ssu4g2410 325 SUPERFAMILY Ammonium transporter 1 269 - -
Ssu4g2410 325 Pfam Ammonium Transporter Family 2 287 IPR024041 GO:0008519|GO:0016020|GO:0072488
Ssu4g2410 325 Gene3D Ammonium transporter AmtB like domains 1 290 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2410 Ssu-Chr4 59985620 59994382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2410 1 325 Inorganic Solute Cotransporters AT2G38290 76.147 2.42e-177 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2410 K03320 - gmx:100798599 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2410 4 59985620 59994382 Ssu4g2410 4 59985620 59994382 ECH