Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2405 ATGGATTACACTCCTGCTAGTAACCCTGCCTCATCTGCAGGGTATTCTTCTAAGGCAAACAGAAACAAGGAGAAAAAGGGTGTGAAGAAGTGCAAAGGAGTGAGGCTTTCCACCGACCCACAAAGCGTGGCAGCCAGAGAACGAAGGCATAGAATCAGTGACCGGTTCAAGATCTTGCAGAGCATGGTCCCTGGTGGGAGTAAGATGGACACAGTGTCTATGTTGGAGGAAGCCATTCAGTATGTGAAGTACCTCAAGACCCAGATTTGGCTTCACCAAACCATGATAAACATTATGGATGATAATGAGACGCCCTCACCTGTGTACCTTAATGATTGTTATTTCCCTTCTGAACAGTTCATTTCCCCTGAGCAAAATCCGTCGCTTGATTATAACATGCAGAATTTACAGCATCTGCCACTAGCCCAATGCAGCTTCCAAGGTGAAGACACAACCTACTTTGATACCTCTTTGAAATATTGGCCAGCTTAA 492 0.4533 MDYTPASNPASSAGYSSKANRNKEKKGVKKCKGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKTQIWLHQTMINIMDDNETPSPVYLNDCYFPSEQFISPEQNPSLDYNMQNLQHLPLAQCSFQGEDTTYFDTSLKYWPA 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2405 163 MobiDBLite consensus disorder prediction 1 46 - -
Ssu4g2405 163 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 19 143 - -
Ssu4g2405 163 Gene3D - 40 94 IPR036638 GO:0046983
Ssu4g2405 163 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 85 IPR011598 GO:0046983
Ssu4g2405 163 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 143 IPR045843 GO:0003700|GO:0006355
Ssu4g2405 163 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 96 IPR036638 GO:0046983
Ssu4g2405 163 MobiDBLite consensus disorder prediction 1 18 - -
Ssu4g2405 163 CDD bHLH_AtIND_like 37 99 - -
Ssu4g2405 163 Pfam Helix-loop-helix DNA-binding domain 46 86 IPR011598 GO:0046983
Ssu4g2405 163 SMART finulus 42 91 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2405 Ssu-Chr4 59869415 59869906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2405 32 119 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 50.000 9.29e-22 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g2405 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2405 - - pvu:PHAVU_010G073400g 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2405 4 59869415 59869906 Ssu4g2405 4 59869415 59869906 ECH