Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2399 ATGAATCCACAGAGACCAAATTGTctaaataatgattataataaagGCTGCAAAATTCTACAAGATGCTTATACTTCACTCTTTGAAGGTTTTGCATCCATTGTGAGGAACCAGCCGGGGCAAATAGTGGGAAAAGGTGAAAACCTTGAAAGAAAGTCTTTGGAGTTGCAGGTTCAGTCTGATTATTGTTCCAGAAATCATTTCACAAATACTGATCAAAAGAGCAAGAGAGATACTGATCATGGATCCAAAAAAAGCAAGAAATACAAGGGAACTCAGGATGGCTTTGGATTGACTTTTACTGATTCTAGAGATGAAAAGATACATTCAGAGCATAGAAGAACTGAGGGGAGCATGAGTAAGGCATGGGGATCATGGGCTCATGCCCTTCACCAAATAGCTATACATCCTGAAAAGCATAAGGgtgatttgcttgaaatatCCGAAGATGTTATTGTATTGAATGATATGTATCCTAAGGCACGGAAGCATGTTCTGGTGTTGGCACGAACTGGGGCTCTTGATTGTCTGGCAGATGTCCAAAAGGAGCACCTTCAGTTATTGAAGAAGATGCATGATGTGGGTTTAAAGTGGGCTGAGAAGTTCTTGAATGAGAATGCTTCTCTGGTATTTCGTCTTGGATATCACTCGGCTCCATCAATGCGACAACTACATTTACATGTTATTAGCCAGGACTTCGAATCAACACATTTAAAGAATAAGAAGCACTGGAACTCGTTTAACACTGCTTTCTTTCGTGACTCGGTAGATGTAATTGATGAGATCTCTAGTCATGGGAAGGCAACATTGAAAGATGATGACAAGCTACTGTCTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCGCATCCAAACATACCCCGCTTAAAATCACATATTGGCAGCTGCCAATCCCCCTTTCCTGCTTACCTACTTCAAAACGGACGTTTGGTGCATGCACCAGGGGAACCTCGTAACAATGCCCAGTAG 990 0.4071 MNPQRPNCLNNDYNKGCKILQDAYTSLFEGFASIVRNQPGQIVGKGENLERKSLELQVQSDYCSRNHFTNTDQKSKRDTDHGSKKSKKYKGTQDGFGLTFTDSRDEKIHSEHRRTEGSMSKAWGSWAHALHQIAIHPEKHKGDLLEISEDVIVLNDMYPKARKHVLVLARTGALDCLADVQKEHLQLLKKMHDVGLKWAEKFLNENASLVFRLGYHSAPSMRQLHLHVISQDFESTHLKNKKHWNSFNTAFFRDSVDVIDEISSHGKATLKDDDKLLSMELRCHRCRSAHPNIPRLKSHIGSCQSPFPAYLLQNGRLVHAPGEPRNNAQ 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2399 329 MobiDBLite consensus disorder prediction 70 91 - -
Ssu4g2399 329 Gene3D - 125 305 IPR036265 -
Ssu4g2399 329 PANTHER APRATAXIN-RELATED 91 322 - -
Ssu4g2399 329 Pfam Scavenger mRNA decapping enzyme C-term binding 133 243 - -
Ssu4g2399 329 MobiDBLite consensus disorder prediction 65 116 - -
Ssu4g2399 329 MobiDBLite consensus disorder prediction 100 116 - -
Ssu4g2399 329 SUPERFAMILY HIT-like 120 287 IPR036265 -
Ssu4g2399 329 Pfam C2HE / C2H2 / C2HC zinc-binding finger 248 300 IPR032566 -
Ssu4g2399 329 PANTHER APRATAXIN 91 322 IPR026963 GO:0003677|GO:0006281|GO:0033699
Ssu4g2399 329 ProSitePatterns HIT domain signature. 212 230 IPR019808 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2399 1 318 C2H2 Transcription Factor Family AT5G01310 56.289 1.10e-119 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2399 K10863 - gmx:100786762 584.334