Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2378 ATGGCTAAACCAGAAAAACCAAAACCCCGGTGTTTTCCTAGCTTCCTAAGTGTGTTTCTATGTGCTGGAAATGGAACTAGTCCTCCACTGCACCCATCAGATCACATCACCGAATCAGACGAATCAGAAAATGCACATTCCAACAAAGAAACGCTGGTGGACAATGCTTCTACACCTGGAGTGGTGGCAAGGCTAATGGGGTTAGATTCACTTCCAAACCCCAAATGGGTAGTGAAAGGAGGCACCCCAGATTCTGTTCCTAGAAGCAGGTCAGTGAACTTTGTGGACTACTTGCTTGAGTTTGACGCAAGCCATGCCAACCATCGTAGAGTGAAGACCTCAGCATCGTTCAGAGAGGTTCCTAATTTGGTTCAGAGGCAAAAGGGTGATAATCTCTTCGTGCTTTGCATGAATGGTAACAATAACGTGAGTGAAGACCAAGAGACTCAACCTGAAATGAGGAATTTGGAAACGGGGTTGGGAGAGTTGAGGCAGAGGAAGAGGCAGGGGAGTAAGAACAACGAGATTGTGAGTGTGAAGAAGGAGAGGAATCAAGGGAAGAACAAGAAGATTTCCAAGCTGAAGAATGAACCAAGGAGGGTCCCTTCTTCTAAGAATGGCTCAAAGGGTCGAAATCATCATGGTGAGGCTAAAGATTTGTCTTCTGTGTCGTCATGCTCCTCCAAGTGTTGTTCTTGTAGTAATAGACATAGTGGTGCTAGTTCAGGATCAAGGTTGAACACTTCGTTGCCAAATAGGCACAAGAAGGGGTTTGTTGAACAAAAAGTGAGGAGGAACATGAGAAACCAGCAGTCACTGCTGAAGGTAGAAAGTGAATGCAGCTTGGAAAATCGCAGTCCAGTTTCAGTTCTAGATAGCAATGACTATCCTTTCCTTGATGGACCTGATTTTCTAGATGGTACAGGCACCGTAGCTTCAAAGTCAAAGTGGGAATCTCCATCACTATTGTCCTTGGATGATGATGTTGAAGACACTGCGAGTACTAATAAAGGTTATACCTTCATTGATGTCCACAAGGAAGCAGAGTATTACTTAGAACTGATGTTGAAGCTTCGTACTTTGACAGAACAGGATATAACAGAGTCAGATTGTACCTCAAAACGTATACGTGAGAGTGAAAGCTATGGGGAAATTTGCTTGATGTTCGAGCATAAAATTTTCGACCTTTTATTATATGAGGTCATCaatgaagttttagaactttattgttga 1233 0.4274 MAKPEKPKPRCFPSFLSVFLCAGNGTSPPLHPSDHITESDESENAHSNKETLVDNASTPGVVARLMGLDSLPNPKWVVKGGTPDSVPRSRSVNFVDYLLEFDASHANHRRVKTSASFREVPNLVQRQKGDNLFVLCMNGNNNVSEDQETQPEMRNLETGLGELRQRKRQGSKNNEIVSVKKERNQGKNKKISKLKNEPRRVPSSKNGSKGRNHHGEAKDLSSVSSCSSKCCSCSNRHSGASSGSRLNTSLPNRHKKGFVEQKVRRNMRNQQSLLKVESECSLENRSPVSVLDSNDYPFLDGPDFLDGTGTVASKSKWESPSLLSLDDDVEDTASTNKGYTFIDVHKEAEYYLELMLKLRTLTEQDITESDCTSKRIRESESYGEICLMFEHKIFDLLLYEVINEVLELYC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2378 410 Pfam DUF761-associated sequence motif 58 73 IPR032795 -
Ssu4g2378 410 MobiDBLite consensus disorder prediction 159 225 - -
Ssu4g2378 410 PANTHER OS05G0128300 PROTEIN 1 409 - -
Ssu4g2378 410 MobiDBLite consensus disorder prediction 159 218 - -
Ssu4g2378 410 MobiDBLite consensus disorder prediction 34 48 - -
Ssu4g2378 410 PANTHER ALC-INTERACTING PROTEIN 1 1 409 - -
Ssu4g2378 410 MobiDBLite consensus disorder prediction 29 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2378 Ssu-Chr4 58526664 58529545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2378 1 405 TRM (TON1 Recruiting Motif) Superfamily AT5G01370 27.079 9.32e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2378 - - gmx:102668485 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2378 4 58526664 58529545 Ssu4g2378 4 58526664 58529545 ECH