Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2377 ATGGAGGGTCATCATCCCCGTCACCACCAAgggcagcaacaacaacaacaacaaaggcTTCACCCTCAGAATACGAGTGTCAACTTGGATGTCACCGATAGGTTTCCCCAGTGGAGCATCCAGGAGACAAAGGAGTTCCTCGTGATCAGGGCAGAGCTGGATCAGACTTTCATGGAGACAAAGAGGAACAAGCAGTTGTGGGAAGTGATCTCCAACCGAATGAAGGAAAAGGGTTACCATAGGAGTGCAGAGCAGTGCAAGTGCAAGTGGAAAAATCTCGTTACCCGCTATAagGGATTTGAAACAATGGAGCAAGAAGCGATGAGACAGCAATTCCCATTTTACAATGATTTTAATGCGATTTTCATGGCAAGGATGCAGAGAATGAGGTGGGCTGAAGCCGAGGTTGGATCGAAGAAGAACAAGGCGACGCAGCTTTCATCCAATGAAGAAGAAGATGGTAATGAAGAGAGTGAGGTTGGTAGCagcagaaagaagaaaaaggcaaAGATAGTTAATgcgggtggtggtggtggtagcagcagTTTGAATAGTTTAAAGGAGATTTTAGCGGAGTTCATGAGGCAACAGATGCAAATAGAAGCGCAATGGATGGAAGCGTTTGAGGCAAGGGAAAATGAGAGGAGGTTGAAGGAGATGGAGTGGAGGCAAACCATGGAGGTGTTAGAGAATGAGAGGATAATGATGGAAGAAAGATGGAGACAAAGGGAGGAACAAAGGAGGATTAGAGAAGAAGCTAGGGTTGAGAAGAGGGATGCTCTAATCACAGCACTGCTAAACAAGCTAGAGAGGCAGGAAATGTAG 825 0.4145 MEGHHPRHHQGQQQQQQQRLHPQNTSVNLDVTDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGYHRSAEQCKCKWKNLVTRYKGFETMEQEAMRQQFPFYNDFNAIFMARMQRMRWAEAEVGSKKNKATQLSSNEEEDGNEESEVGSSRKKKKAKIVNAGGGGGSSSLNSLKEILAEFMRQQMQIEAQWMEAFEARENERRLKEMEWRQTMEVLENERIMMEERWRQREEQRRIREEARVEKRDALITALLNKLERQEM 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2377 274 MobiDBLite consensus disorder prediction 137 178 - -
Ssu4g2377 274 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 273 - -
Ssu4g2377 274 PANTHER - 1 273 - -
Ssu4g2377 274 MobiDBLite consensus disorder prediction 1 22 - -
Ssu4g2377 274 ProSiteProfiles Myb-like domain profile. 38 94 IPR001005 -
Ssu4g2377 274 Gene3D - 38 99 - -
Ssu4g2377 274 Coils Coil 183 203 - -
Ssu4g2377 274 CDD GT1 36 99 - -
Ssu4g2377 274 Pfam Myb/SANT-like DNA-binding domain 37 120 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2377 Ssu-Chr4 58477155 58478475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2377 7 271 Trihelix Transcription Factor Family AT2G38250 52.878 1.09e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu4g2377 Myb_DNA-bind_4 1.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2377 - - gmx:100818384 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2377 4 58477155 58478475 Ssu4g2377 4 58477155 58478475 ECH