Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2375 ATGGGAGGTGACTTTGCCAGCGGAGGAAGTTCCGCCGGAGCTTCCGAGCCAGCGCTTGGAATCAATTTTGCTAGGGATGGCATGGACCGCAGGGATTGGCTCTCTCTGGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTGAACCGCAATGAAAGGAAACGTTTATTTAGCATGATCAATGATCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCAGTTAAGGACAAGCCCACTGCAGACAGTGGAAGCAAATCTAGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTCGCAGATGAAGGTTATGAAGAGGAGGATGACGAGCATAGTGAAACCCTTTGTGGTAGCTGTGGCGGAAATTACAATGCAGATGAATTTTGGATTGGCTGTGATATATGTGAGAGGTGGTTCCATGGGAAGTGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGCCCATCTTGCAGCTTGAGGCGGGGCAGACCCTAA 555 0.4793 MGGDFASGGSSAGASEPALGINFARDGMDRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSMINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2375 184 CDD PHD_AL_plant 130 180 IPR044104 -
Ssu4g2375 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 178 IPR013083 -
Ssu4g2375 184 ProSitePatterns Zinc finger PHD-type signature. 131 177 IPR019786 -
Ssu4g2375 184 ProSiteProfiles Zinc finger PHD-type profile. 128 180 IPR019787 -
Ssu4g2375 184 MobiDBLite consensus disorder prediction 82 122 - -
Ssu4g2375 184 Pfam Alfin 15 79 IPR021998 GO:0006355|GO:0042393
Ssu4g2375 184 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 15 183 - -
Ssu4g2375 184 SUPERFAMILY FYVE/PHD zinc finger 119 182 IPR011011 -
Ssu4g2375 184 SMART PHD_3 130 178 IPR001965 -
Ssu4g2375 184 MobiDBLite consensus disorder prediction 93 110 - -
Ssu4g2375 184 PANTHER CPG BINDING PROTEIN 15 183 IPR045104 GO:0006355|GO:0042393
Ssu4g2375 184 Pfam PHD-finger 131 178 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2375 Ssu-Chr4 58122619 58124575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2375 19 183 Alfin-like Transcription Factor Family AT5G05610 77.711 1.84e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Ssu4g2375 Alfin 8.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2375 - - gmx:100793126 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2375 4 58122619 58124575 Ssu4g2375 4 58122619 58124575 ECH
Ssu3g1106 3 26238446 26240728 Ssu4g2375 4 58122619 58124575 PCT