Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2373 ATGGGTGTGGACTATTATAAACTTCTTCAGGTAGATCGAAATGCCAGCGATGAGGATCTCAAGAGAGCTTATCGCAGGCTTGCTATGAAGTGGCACCCTGATAAGAACCCTAACAACAAAAAAGATGCTGAAGCCAAATTCAAGCAAATCTCTGAAGCCTATGATGTTTTGAGTGATCCACAAAAGAGGGCAGTGTATGATCAGTATGGTGAGGAGGGATTGAAAGGGCAGGTGCCACCCCCGGGTGCTGGTGGATTTGCCGGTGGCAGCGATGGTGGGCCGACGATGTTCCGGTTCAACCCGAGAAGTGCAGATGATATATTCTCTGAGTTCTTTGGGTTTTCGAGTCCATTTGGAATGGGTGATATGGGTGGCCGTGCCGGTGCATCTGGCTTTCCCAGATTTGGGGAGGACATTTTTGCTTCTTTAAGGAGTGGGGCTGGAGAAGGCTCTGGCAATGCACCAAGGAAAAGTGCACCCATTGAGAGAACATTGCAATGCAGTTTGGAGGATTTGTACAAAGGGACtaccaaaaaaatgaagatttcCAGGGATGTGATTGATGCCAGTGGGAGGCCCACCACTGTAGAGGAAATTCTAACCATTGAGATCAAGCCAGGTTGgaagaaaggaacaaaaataacTTTTCCAGAGAAGGGAAATGAACAAAGAGGAGTTATTCCAGCTGACCTTGTTTTCATTATTGATGAGAAACCTCATGGTGTCTTCAAAAGGGATGGCAATGATCTTGTTGTCACGCAGAAGATATCTCTTGTTGAAGCTCTGACGGGTTACACGGCGCAACTGACAACACTCGATGGGAGGAATCTAACTGTCTCCACCAACTCCATCATTAGTCCGACATACGAAGAAGTTATTAAAGGAGAGGGTATGCCCGTTCCCAAGGAACCTTCCAAAAGGGAAACTTGA 930 0.4527 MGVDYYKLLQVDRNASDEDLKRAYRRLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPGAGGFAGGSDGGPTMFRFNPRSADDIFSEFFGFSSPFGMGDMGGRAGASGFPRFGEDIFASLRSGAGEGSGNAPRKSAPIERTLQCSLEDLYKGTTKKMKISRDVIDASGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHGVFKRDGNDLVVTQKISLVEALTGYTAQLTTLDGRNLTVSTNSIISPTYEEVIKGEGMPVPKEPSKRET 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2373 309 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Ssu4g2373 309 Pfam DnaJ C terminal domain 161 307 IPR002939 -
Ssu4g2373 309 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 307 - -
Ssu4g2373 309 CDD DnaJ 4 59 IPR001623 -
Ssu4g2373 309 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Ssu4g2373 309 Gene3D - 160 238 - -
Ssu4g2373 309 SMART dnaj_3 3 62 IPR001623 -
Ssu4g2373 309 Gene3D DnaJ domain 3 123 IPR036869 -
Ssu4g2373 309 SUPERFAMILY HSP40/DnaJ peptide-binding domain 161 240 IPR008971 GO:0006457|GO:0051082
Ssu4g2373 309 SUPERFAMILY HSP40/DnaJ peptide-binding domain 242 304 IPR008971 GO:0006457|GO:0051082
Ssu4g2373 309 CDD DnaJ_C 159 307 - -
Ssu4g2373 309 SUPERFAMILY Chaperone J-domain 3 120 IPR036869 -
Ssu4g2373 309 PRINTS DnaJ domain signature 62 81 IPR001623 -
Ssu4g2373 309 PRINTS DnaJ domain signature 24 39 IPR001623 -
Ssu4g2373 309 PRINTS DnaJ domain signature 6 24 IPR001623 -
Ssu4g2373 309 PRINTS DnaJ domain signature 42 62 IPR001623 -
Ssu4g2373 309 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 307 - -
Ssu4g2373 309 Pfam DnaJ domain 4 67 IPR001623 -
Ssu4g2373 309 Gene3D - 240 308 - -
Ssu4g2373 309 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2373 Ssu-Chr4 58088382 58091964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2373 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.82e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2373 K09510 - gmx:100777607 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2373 4 58088382 58091964 Ssu4g2373 4 58088382 58091964 ECH
Ssu3g1112 3 26431301 26437732 Ssu4g2373 4 58088382 58091964 PCT