Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2366 ATGGGTTCTCGAAACCAGGAGGCATGGGTGATGGAGAATGGGGGGAACCCGAAGGGCTTGAGCAAGGAGACGAGACATGGAAGAACGGCACATAACATGTCATCATCTTCGTTGCGCAAGAAATCTGACCTCACTCTTGTGTCTAAGGTTCACTCTAGCCCCCTTAGAAATGTGTTGGCTAACATTCAAGAGGTCATTCTGGGAACCAAGCTCTCTGTTCTTTTCCCTGCCATTCCCCTTGCCGTCGTTGCTCAATGTTTTGGCTTTGCAAGACCTTGGGTTTTTGCGTTGAGTTTACTTGGGCTTACCCCACTTGCTGAACGAGTCAGCTTCTTGACAGAACAGGTTGCATATTACACTGGTCCCACAGTGGGAGGACTTCTGAATGCAACATGTGGGAATGTCACAGAGCTAATCATAGCAATTTTTGCCCTTAAGAATAACAAAATTGCTGTGGTCAAGTATTCTCTCCTGGGTTCCATAATTTCTAACGTTCTTCTGGTTCTTGGAACCTCTTTATTCTGTGGTGGCCTTGCAAACCTTAGACAGgaacaaaaatatgatagaAGACAGGCAGATATGAACTTGCTTATGCTGTTTGTGTCATTGCTGTGCCACTTGCTGCCAATGCTGTTCCATTATGGTGGTGCCTCAGCAGGTGATACTGCAGACTCATCTCTGCAGTTGTCAAGAGTTGCTAGCATTGTTATGGTGATAGCATATTGTGCTTACCTTGTCTTCCAACTGTGGACTCACCGGCAGCTATTTGAAGCCCGGGATGAAGGTGATGAAGAGGGTGCCAATGATTCAGAAGAAGCAGTGATAGGATTCTGGAGTGGGTTTGCTTGGCTGGTCGGGATGACTGTAATCATTGCTGTGCTGTCTGAATATGTGGTGCAAGCAATTGAGGATGCATCTGATTCATGGGGTTTGTCTGTTAGCTTCCTCGGCATAATCTTGCTTCCAACAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGACATTTCATTGGGTGTTTCCTTGGGTTCTGCAACTCAAATTAGCATGTTTGCGATTCCCCTTTGTGTGATTGTTGCTTGGATTCTGGGTATCAAAATGGACCTCAACTTCAACCTCCTAGAGACAGGTTCTCTTGCTTTGGCAATAATAACCACAGCCTTCACATTACAGGACGGAACTTCTCACTACATGAAAGGCTTTGTTCTCATACTCAGCTACATTATTATTGGGGCATGCTTTTTCGTACAAAGAACACCCTCCAACCAAACTAATGTTCCTAACATAACGCTTAAATCAGCAACTGAAGGAGTTTTTAGAGCTTAG 1350 0.4467 MGSRNQEAWVMENGGNPKGLSKETRHGRTAHNMSSSSLRKKSDLTLVSKVHSSPLRNVLANIQEVILGTKLSVLFPAIPLAVVAQCFGFARPWVFALSLLGLTPLAERVSFLTEQVAYYTGPTVGGLLNATCGNVTELIIAIFALKNNKIAVVKYSLLGSIISNVLLVLGTSLFCGGLANLRQEQKYDRRQADMNLLMLFVSLLCHLLPMLFHYGGASAGDTADSSLQLSRVASIVMVIAYCAYLVFQLWTHRQLFEARDEGDEEGANDSEEAVIGFWSGFAWLVGMTVIIAVLSEYVVQAIEDASDSWGLSVSFLGIILLPTVGNAAEHAGAIIFAFKNKLDISLGVSLGSATQISMFAIPLCVIVAWILGIKMDLNFNLLETGSLALAIITTAFTLQDGTSHYMKGFVLILSYIIIGACFFVQRTPSNQTNVPNITLKSATEGVFRA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2366 449 MobiDBLite consensus disorder prediction 1 40 - -
Ssu4g2366 449 TIGRFAM caca2: calcium/proton exchanger 57 423 - -
Ssu4g2366 449 TIGRFAM cax: calcium/proton exchanger 76 423 IPR004798 GO:0006816|GO:0015369
Ssu4g2366 449 Pfam Sodium/calcium exchanger protein 93 250 IPR004837 GO:0016021|GO:0055085
Ssu4g2366 449 Pfam Sodium/calcium exchanger protein 280 418 IPR004837 GO:0016021|GO:0055085
Ssu4g2366 449 Gene3D - 122 277 IPR044880 -
Ssu4g2366 449 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 1 437 IPR004713 GO:0006812|GO:0008324|GO:0016021
Ssu4g2366 449 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 1 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2366 Ssu-Chr4 57877957 57881942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2366 7 431 Antiporters AT2G38170 68.360 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2366 K07300 - gmx:100782052 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2366 4 57877957 57881942 Ssu4g2366 4 57877957 57881942 ECH
Ssu3g1124 3 26741566 26745484 Ssu4g2366 4 57877957 57881942 PCT