Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2363 ATGGCAGGTTCAGAGGTTGTTAGGAACTTGAATCCAAATGATACCAGGGGAAAGACCATTACTTGCAAAGCTGCCGTGGCATACGGTCCTGGAGAGCCCTTTGTGGTGGAACATGTTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTTCACTTCAATCTGCCACACCGATCTCAGCGCTTGGCAAGGCgagAATGAGGCTCAACGTGCGTATCCTCGGATTTTCGGCCATGAAGCTTCCGGgaCTGTGGAGAGTGTGGGTGAAGGTGTACGTGACGTGAAAGAAGGGGACTTGGTGGTGCCAATATTCAACGGGGAATGTGGAGATTGCAAATATTGCAAGTGCGAGAAGACCAACAAGTGCGAGAGGTTTGGGGTGGACGCTAGGAAGAAGGTGATGGTTAGTGATGGTGCCACAAGGTTTTCCACAGTGGATGGAAAACCCATCTTCCATTTCTTGAACACTTCCACTTTCACGGAGTACACGGTGGTGGATTCAGCATGCGTCGTCAAGATTCACGTTGATGGTGATGGCGACCTCAACCCCTACATCAAAAGGCTCACCTTACTCAGTTGTGGCGTATCTACGGGTGTTGGAGCTGCATGGAACACCGCTAACGTGCATTCTGGTTCAACTGTAGCTGTCTTTGGTTTAGGAGCAGTGGGTCTCGCTGTAGCAGAAGGGGCACGAGCTAGAGGTGCATCCAAAATAATAGGCGTGGACATCAACTCTGGCAAATTCATCAAAGCCCAAGCAATGGGCATCACCGACTTCATAAATCCAAGGGATGATGAGAAGCCAGTATATGAGAGGATCAGGGAAATGACTGGTGGGGGTGTGCACTATAGTTTTGAATGTGCTGGAAATTTGAACGTTCTAAGGGATGCTTTCTTGTCAGCTCATGAGGGTTGGGGATTGACTGTGATATTAGGGATTCATCCATCACCAAAAATGCTTCCCATCCACCCAATGGAACTGTTCGAGGGTCGCAGAATAGTAGGATCAGTTTTTGGAGGCTTCAAAGGGAAGACTCAATTGCCACATTTTGCCAAGGAATGCATGCATGGAGTGGTAAAGTTAGATGATTTTATCACTCACGAGCTTCCTTTTGAGGAGATAAACAAGGCCTTTGATCTTTTGACTGCTGGAAAGTCACTGAGATGTCTTCTACACTTCTAA 1194 0.4749 MAGSEVVRNLNPNDTRGKTITCKAAVAYGPGEPFVVEHVLVHPPQKMEVRIKILFTSICHTDLSAWQGENEAQRAYPRIFGHEASGTVESVGEGVRDVKEGDLVVPIFNGECGDCKYCKCEKTNKCERFGVDARKKVMVSDGATRFSTVDGKPIFHFLNTSTFTEYTVVDSACVVKIHVDGDGDLNPYIKRLTLLSCGVSTGVGAAWNTANVHSGSTVAVFGLGAVGLAVAEGARARGASKIIGVDINSGKFIKAQAMGITDFINPRDDEKPVYERIREMTGGGVHYSFECAGNLNVLRDAFLSAHEGWGLTVILGIHPSPKMLPIHPMELFEGRRIVGSVFGGFKGKTQLPHFAKECMHGVVKLDDFITHELPFEEINKAFDLLTAGKSLRCLLHF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2363 397 SUPERFAMILY GroES-like 347 397 IPR011032 -
Ssu4g2363 397 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 15 396 - -
Ssu4g2363 397 SUPERFAMILY GroES-like 15 182 IPR011032 -
Ssu4g2363 397 Pfam Zinc-binding dehydrogenase 225 345 IPR013149 -
Ssu4g2363 397 Gene3D - 202 340 - -
Ssu4g2363 397 PANTHER ALCOHOL DEHYDROGENASE 15 396 - -
Ssu4g2363 397 Pfam Alcohol dehydrogenase GroES-like domain 48 176 IPR013154 -
Ssu4g2363 397 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 193 361 IPR036291 -
Ssu4g2363 397 Gene3D - 25 392 - -
Ssu4g2363 397 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 81 95 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2363 Ssu-Chr4 57771741 57780049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2363 48 385 Monolignol Biosynthesis Gene Families AT2G21890 28.571 7.06e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2363 K00001 - gmx:100787307 731.865