Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2362 ATGTTAATGTTCTCTTCTTCAGTATTTCAACTTTCAATATTGAAAACTTTCTCAaccaaaatatgtaatttttttcattatatattttttaaccttttcatTGTGCAAACCTTGTTTCTGTACAGGGCTGCTGATTATCCAAGAGAATATGATGGCGCCTGCGTACAAATGAGATTGTCTTATAGCCCAGCTGCtcagtttttcctttttctggTTCAGTGGACTGATTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAATTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCCATTTATGAAAGAAAAGCCAGTCTGAAAGAGTTCTATGGTGTGATCTTTCCCTCTTTACTACAACTCCACAGAGGAATCACTGatgtagaagaaagaaaacagaaaGATTTATGTGCTACAAAGTACAAGCCAAAAGATAtaacaagaaaaggaaaactaTCTGAAATCGAtgtagagagagaagaagaatgtGGTATTTGCATGGAGATGAACAACAAGGTTGTGTTGCCCAATTGCAACCACTCATTGTGTATGAAATGCTACAGAAACTGgCATGCACGATCTCAATCTTGCCCTTTCTGTCGAGACAGTCTTCAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAACAACAATGGGATAGATGACTTGGCTTCAGTCAACAAGGAGAATTTAAAAAGACTATTTATGTACATTGACAAGTTGCCTCTGATTGTGCCAGATCCTATATTCATTTCTTATCCTCAGCgcttttga 786 0.3257 MLMFSSSVFQLSILKTFSTKICNFFHYIFFNLFIVQTLFLYRAADYPREYDGACVQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKVYEDGKTTMSIYERKASLKEFYGVIFPSLLQLHRGITDVEERKQKDLCATKYKPKDITRKGKLSEIDVEREEECGICMEMNNKVVLPNCNHSLCMKCYRNWHARSQSCPFCRDSLQRVNSGDLWIYMNNNGIDDLASVNKENLKRLFMYIDKLPLIVPDPIFISYPQRF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2362 261 PANTHER E3 UBIQUITIN-PROTEIN LIGASE AIRP2 43 260 - -
Ssu4g2362 261 Pfam Zinc finger, C3HC4 type (RING finger) 163 210 - -
Ssu4g2362 261 ProSiteProfiles Zinc finger RING-type profile. 166 204 IPR001841 -
Ssu4g2362 261 ProSitePatterns Zinc finger RING-type signature. 181 190 IPR017907 -
Ssu4g2362 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 213 IPR013083 -
Ssu4g2362 261 SMART ring_2 166 203 IPR001841 -
Ssu4g2362 261 SUPERFAMILY RING/U-box 155 209 - -
Ssu4g2362 261 PANTHER RING FINGER PROTEIN 41, 151 43 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2362 Ssu-Chr4 57699642 57701378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2362 110 204 C3H Transcription Factor Family AT5G01960 30.000 8.46e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2362 K25840 - gmx:100819267 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2362 4 57699642 57701378 Ssu4g2362 4 57699642 57701378 ECH