Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2360 ATGAAGAATGCAAAGGGCAAGGGAGCAGCGAGGACCTCAAAAGAAGCACTGAAGCCTGTTGATGACCGAAGGGTTGGTAAGCGGAAGGCTTCTGCTAGGCCTGACAAGAGTAGTGCACCGAAGgcaaagaaggagaagaaggcCACGAAAGACCCCAACAAGCCAAAAAGACCGCCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGGAAGACCTTTAAGGCTGAGAATCCTAATGTGAAGGCTGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCTTGTCCAATGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGCTGagtatgaaaaaattatgaatgctTACAATAAAAAGCAGGCAAGATCTGCAGATGATGATGAATCAGACAAGTCCAAATCTGAAGtgaatgatgaagatgatgaagccAGTGGAGAGGAGGACCACCAAGAGGAGGAGGACGAGGACGAcgaggaggaagaggatgatgaagatgatgactGA 525 0.3962 MKNAKGKGAARTSKEALKPVDDRRVGKRKASARPDKSSAPKAKKEKKATKDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSAVGKAGGEKWKSLSNAEKAPYEAKAAKRKAEYEKIMNAYNKKQARSADDDESDKSKSEVNDEDDEASGEEDHQEEEDEDDEEEEDDEDDD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2360 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 1 164 - -
Ssu4g2360 174 MobiDBLite consensus disorder prediction 139 174 - -
Ssu4g2360 174 SMART hmgende2 54 125 IPR009071 -
Ssu4g2360 174 CDD HMGB-UBF_HMG-box 55 120 - -
Ssu4g2360 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 164 IPR031061 -
Ssu4g2360 174 SUPERFAMILY HMG-box 40 125 IPR036910 -
Ssu4g2360 174 Gene3D High mobility group box domain 38 140 IPR036910 -
Ssu4g2360 174 MobiDBLite consensus disorder prediction 8 54 - -
Ssu4g2360 174 MobiDBLite consensus disorder prediction 88 174 - -
Ssu4g2360 174 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 55 124 IPR009071 -
Ssu4g2360 174 MobiDBLite consensus disorder prediction 1 59 - -
Ssu4g2360 174 Pfam HMG (high mobility group) box 55 124 IPR009071 -
Ssu4g2360 174 MobiDBLite consensus disorder prediction 105 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2360 Ssu-Chr4 57655805 57657632 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ssu4g2360 HMG_box 3.8e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2360 K25507 - gmx:100499704 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2360 4 57655805 57657632 Ssu4g2360 4 57655805 57657632 ECH