Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2359 ATGCAAGTGAGGAAATCATTTGGCATAGTGTGCAACCAAGATTATTGGCCACAATATGATGAAGACAAACTGTGCCACAATCCAGAGATGAGAAGAAATCCTCGTGGTCATCTTCAATTAGAGCACATTCGTATTGAAATGGACATTAAGAAAAAGGGTCAACCAAAGAGATGTGGTTTATGTCAAAACAAAGCACAAACCCATGGCCACCGCAACCGCAAACCGCTGCCGCAACTTCCTCCTTCATCGGGACGCGCCTCCGCGAGGCCCATTCCGGCTCTGGGAGGGTCCAGGCGAGGTTCGGGTTCGGGTCGAAGAAGAAAAGCCCGCCGCCGAAGAAGGGCGTCGAGGGGCCCGGGGTCGGACCGGCCGCTGTGGTACCCGGGGGCGAAGGCGCCGGAGTGGCTCGACGGGAGCCTGGTCGGGGACTACGGGTTCGACCCGTTCGGGCTGGGGAAGCCCGCGGAGTACCTACAGTACGAGCTGGACTCGCTGGACCAGAACCTCGCGAAGAACGTGGCCGGGGACATCATCGGGACCAGGACCGAGGTCTCCGACGTGAAGTCCACGCCGTTCCAGCCCTACAGCGAGGTGTTCGGGCTCCAGAGGTTCCGGGAGTGCGAGCTCATTCACGGAAGGTGGGCCATGCTCGCCACGCTCGGGGCCCTCACTGTTGAGTGGCTCACCGGTGTTACGTGGCAGGACGCCGGGAAGGTCGAGCTCGTGGAAGGGTCATCATACCTTGGGCAACCACTTCCGTTCTCAATTACCACATTGATTTGGATCGAGGTTCTACTAGTTGGCTACATAGAGTTCCAGAGGAACGCAGAGCTTGACCCAGAAAAGAGGCTGTACCCAGGTGGCAGCTTCTTCGACCCTCTTGGCTTGGCCTCAGACCCAGAGAAGAAAGCCACCCTGCAATTGGCCGAGATCAAGCATGCACGTCTTGCCATGGTGGGCTTCTTGGGCTTTGCAGTTCAAGCTGCTGCCACTGGCAAGGGCCCACTTAACAACTGGGCCACCCACTTGAGTGACCCACTTCACACAACCATCATCGACACCTTCTCATCCTCCTCTTAA 1080 0.575 MQVRKSFGIVCNQDYWPQYDEDKLCHNPEMRRNPRGHLQLEHIRIEMDIKKKGQPKRCGLCQNKAQTHGHRNRKPLPQLPPSSGRASARPIPALGGSRRGSGSGRRRKARRRRRASRGPGSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAKNVAGDIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLLVGYIEFQRNAELDPEKRLYPGGSFFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2359 359 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 109 358 - -
Ssu4g2359 359 MobiDBLite consensus disorder prediction 48 128 - -
Ssu4g2359 359 Pfam Chlorophyll A-B binding protein 132 328 IPR022796 -
Ssu4g2359 359 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 109 358 IPR001344 GO:0009765|GO:0016020
Ssu4g2359 359 MobiDBLite consensus disorder prediction 101 117 - -
Ssu4g2359 359 Gene3D Chlorophyll a/b binding protein domain 126 359 - -
Ssu4g2359 359 SUPERFAMILY Chlorophyll a-b binding protein 118 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2359 Ssu-Chr4 57617606 57624880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2359 121 358 Chloroplast and Mitochondria Gene Families AT3G08940 91.176 1.92e-163 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2359 K08915 - gmx:100785180 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2359 4 57617606 57624880 Ssu4g2359 4 57617606 57624880 ECH