Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2351 ATGGTGGTTGGGGTTAGAGACAAAGGTGTCACACGAGTGAATCATGGTGTCAGCTGCGGTGATGGTTGGGGTCAAATTGTGGTTGGGGTCGCCATTTTGGGGAGGAAATGTGGTGTTGGCGGCAGTAATGGAGGAGTTGCGAACGATCTTGGGTTTTGGATGGCCTTCCTTCATTTTGTAGGAAATTCATTGGTAGAAGATAACAATGAAAAACATGTGGATGATCTGGATGTCCAATTATTTGATCTACCGACAATTACAACTGCCACTAATGACTTCTCCCTAGAGAATAAGATTGGAGAAGGCGGTTTTGGACCTGTATACAAGGGAATATTAACAGACGGGCAAGAAATTACTGTAAAGACTCTGTCAAGGAGCTCATGGCAAGGAGTGACAGAGTTCATAAATGaagtaaaattgattgcaaAACTTCAGCATCGAAATCTTGTAAAACTTCTTGGTTGTTGCATTCAAGGACAAGAGAAAATGCTAATTTATGAGTACATGGCAAACAGCAGTCTAGACTCCTTCatttttggtatgCAGTACCCAGAAGATAGGCCTACAATGGCGACCGTTATTCTGATGTTGGAGAGTCACATAGAACTAGTTGAGCCTAAAGAACATGGTTTCATTCCAAGAAATGTTTCAGCTGAAGAAAATTTACACTTAAATCAGAAAGACACGAGTTCAACAAACGATGTGACAATTACCATATTAGAAGCTCGATGA 732 0.4003 MVVGVRDKGVTRVNHGVSCGDGWGQIVVGVAILGRKCGVGGSNGGVANDLGFWMAFLHFVGNSLVEDNNEKHVDDLDVQLFDLPTITTATNDFSLENKIGEGGFGPVYKGILTDGQEITVKTLSRSSWQGVTEFINEVKLIAKLQHRNLVKLLGCCIQGQEKMLIYEYMANSSLDSFIFGMQYPEDRPTMATVILMLESHIELVEPKEHGFIPRNVSAEENLHLNQKDTSSTNDVTITILEAR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2351 243 Gene3D Phosphorylase Kinase; domain 1 66 168 - -
Ssu4g2351 243 Pfam Protein tyrosine and serine/threonine kinase 94 180 IPR001245 GO:0004672|GO:0006468
Ssu4g2351 243 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 58 180 - -
Ssu4g2351 243 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 182 242 - -
Ssu4g2351 243 SUPERFAMILY Protein kinase-like (PK-like) 74 189 IPR011009 -
Ssu4g2351 243 SMART tyrkin_6 93 239 IPR020635 GO:0004713|GO:0006468
Ssu4g2351 243 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 58 180 - -
Ssu4g2351 243 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 182 242 - -
Ssu4g2351 243 ProSiteProfiles Protein kinase domain profile. 93 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2351 Ssu-Chr4 57272871 57276474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2351 77 200 Receptor kinase-like Gene Family AT4G21400 52.344 7.45e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu4g2351 PK_Tyr_Ser-Thr 7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2351 - - gmx:100802962 219.164