Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2329 ATGGAGGGGAAAGAAGAGGATGTGAGAGTTGGAGCCAATAGGTACGGAGAGGGGCAACCAATAGGAACTGCTGCTCAGGCCCAAGATGCCAAAGACTACAGAGAGCCACCTTCTGCGTCTCTCCTTGAGCCTGGCGAGTTGTCATCGTGGTCTTTCTACAGAGCAGGCATAGCAGAGTTTGTGGCCACGTTCTTGTTCCTTTACATCACGGTGTTAACTGTGATGGGAGTGGGCAATTCCAAAAGCAAGTGTTCCACCGTGGGTGTCCAAGGCATAGCTTGGGCGTTTGGGGGAATGATCTTTGCTCTTGTTTATTGCACTGCTGGCATCTCAGGGGGTCATATTAACCCAGCAGTGACGTTTGGGCTATTCTTGGCACGCAAGCTCTCTCTGACAAGGGCAGTCTTTTACATAATTATGCAGTGCTTGGGAGCTATCTGTGGGGCCGGTGTAGTTAAGGGGTTCCAGCCACACCAGTATGAGAGGCTTGGTGGTGGTGCCAACATACTCAATAGAGGGTACACCAAGGGTGATGGCCTTGGAGCAGAGATTGTCGGCACATTTGTGCTTGTTTACACTGTCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCAATTTTGGCACCGTTGCCTATTGGTTTTGCTGTATTTCTGGTGCACTTGGCTACAATTCCTATCACAGGGACTGGTATCAACCCTGCTAGAAGTCTAGGTGCAGCCCTTATATACAACAAGGACCAAGCTTGGGACGACCATTGGATTTTTTGGGTAGGGCCTTTCGTTGGGGCAGCACTTGCAGCTTTGTACCATCAGGTAGTGATTAGGGCCATCCCCTTCTCGTCGAAGTGA 864 0.5023 MEGKEEDVRVGANRYGEGQPIGTAAQAQDAKDYREPPSASLLEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVGNSKSKCSTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFQPHQYERLGGGANILNRGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWVGPFVGAALAALYHQVVIRAIPFSSK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2329 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
Ssu4g2329 287 TIGRFAM MIP: MIP family channel proteins 58 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g2329 287 Gene3D Glycerol uptake facilitator protein. 39 284 IPR023271 -
Ssu4g2329 287 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 1 287 - -
Ssu4g2329 287 CDD MIP 54 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g2329 287 Pfam Major intrinsic protein 46 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g2329 287 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Ssu4g2329 287 SUPERFAMILY Aquaporin-like 47 280 IPR023271 -
Ssu4g2329 287 MobiDBLite consensus disorder prediction 1 39 - -
Ssu4g2329 287 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g2329 287 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g2329 287 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g2329 287 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g2329 287 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g2329 287 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2329 Ssu-Chr4 56102964 56105591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2329 1 287 Major Intrinsic Protein MIP AT3G61430 84.669 8.17e-177 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2329 K09872 - cit:102618921 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2329 4 56102964 56105591 Ssu4g2329 4 56102964 56105591 ECH
Ssu3g1154 3 27332854 27334467 Ssu4g2329 4 56102964 56105591 PCT