Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2325 ATGCCTTCCTCTTCCACCACCATAGTCTCCAAATGCGTCATTCACCCCGACCAGAAATCAGACATGAAACCGCTGAAACTCTCTGTTTCGGACCTTCCAATGTTGTCGTGTCACTACATCCAAAAGGGCGTGCTGCTCACCGCCCCACCCTCCTCCTTCGACGACCTCATTCTCTCCCTCAAACACTCTCTCTCCGTCGCTCTCTCCCACTTCCCCGCCCTCGCCGGCCGTCTCAACACCGACTCCGACGGCTACGTTCACATCATGTGCAACGACGCCGGCGTGGACTTCATCCACGCCAAGGCGAAGCACTTGACGCTAAACGCCGTCGTTTCGCCCTCGCTCGTTGACGTGCACCCCTGCTTCAAGGAATTCTTCGCCTACGACATGACGATCTCCTACTCCGGCCACCACAACCCCCTCGCCGCCGTCCAGGTCACCGAGCTCGCCGACGGCGTCTTCGTCGGCTGCACCGTCAACCACGCCGTCACCGACGGCACCTCCTTCTGGCACTTCTTCAACACCTTCGCCGCCGTCACCAAGGGCGGCGCCGCCAAGAAGGTCCTCCGCGCGCCCGACTTCGGCCGCGACACCGTCTTCAACTCCGCCGTGGTACTCCCCGTCCCCGCCCGCGGCCCCGCCGTCACCTTCGCCGCCGACGAACCCCTCCGCGAACGCGTCTTCCACTTTTCCCGCGAAGCGATTCAGAAACTCAAACAAAGAGCCAACGCCAACGACACCCACCAATTAACGGAAGTAATGGGAAAACAAGCAAATGACGGTTGGAAAGTCGTTAACGGTAACGTTAACGGTAACGGAAAGATTGTTAACGGGAGAAACGAGATCTCGTCGTTTCAGTCGTTATCTGCTCAGCTCTGGCGTGCGGTGACACGTGCGAGGAAATTCGTTGACCCATCCAAAACGTCGACGTTTCGGATGGCGGTTAATTGCCGTCACCGTTTGGAGCCTAAGATGGATGCGTTTTATTTCGGCAATGCGATACAGAGTATTCCAACCGTTGCTACCGTTGGGGACATACTCTCGCGCGATCTGCGTTTTTGCGCGGAGTTGCTGCACCGAAACGTCGTCGCACACAACGACGCTACGGTGCACCGCGGCATAGAGGATTGGGAGAAAGCGCCGAGGTTGTTCCCTCTCGGGAACTTCGACGGGGCCATGATTACCATGGGGAGTTCCCCGCGTTTTCCCATGTACGACAACGACTTCGGGTGGGGGAGACCCTTGGCGATTCGGAGCGGGAAAGCGAACAAGTTCGACGGCAAGATCTCTGCGTTTCCCGGGCGCGAGGGAAACGGCAGCGTTGATCTTGAAGTCGTTTTGGCCCCGGAGACCATGGCGGACCTCGTAAACGACATGGAGTTTATGCAATACGTAACGCCGGGGCCGGCCGTGTAA 1416 0.584 MPSSSTTIVSKCVIHPDQKSDMKPLKLSVSDLPMLSCHYIQKGVLLTAPPSSFDDLILSLKHSLSVALSHFPALAGRLNTDSDGYVHIMCNDAGVDFIHAKAKHLTLNAVVSPSLVDVHPCFKEFFAYDMTISYSGHHNPLAAVQVTELADGVFVGCTVNHAVTDGTSFWHFFNTFAAVTKGGAAKKVLRAPDFGRDTVFNSAVVLPVPARGPAVTFAADEPLRERVFHFSREAIQKLKQRANANDTHQLTEVMGKQANDGWKVVNGNVNGNGKIVNGRNEISSFQSLSAQLWRAVTRARKFVDPSKTSTFRMAVNCRHRLEPKMDAFYFGNAIQSIPTVATVGDILSRDLRFCAELLHRNVVAHNDATVHRGIEDWEKAPRLFPLGNFDGAMITMGSSPRFPMYDNDFGWGRPLAIRSGKANKFDGKISAFPGREGNGSVDLEVVLAPETMADLVNDMEFMQYVTPGPAV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2325 471 Pfam Transferase family 6 462 - -
Ssu4g2325 471 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 5 466 - -
Ssu4g2325 471 Gene3D - 6 205 IPR023213 -
Ssu4g2325 471 Gene3D - 221 461 IPR023213 -
Ssu4g2325 471 PANTHER ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 5 466 - -
Ssu4g2325 471 SUPERFAMILY CoA-dependent acyltransferases 60 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2325 Ssu-Chr4 55858456 55859871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2325 60 452 Monolignol Biosynthesis Gene Families AT5G48930 27.543 1.16e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2325 - - gmx:100804321 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3008 6 69030213 69031718 Ssu4g2325 4 55858456 55859871 ECH
Ssu4g2325 4 55858456 55859871 Ssu4g2325 4 55858456 55859871 ECH