Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2320 ATGCACATCCGtaagaaattagagaaaaaaacaaatCGGAAAAGTGGTCGACTGGTCGAATCAATCATCAGAGTACAATTTGTCAAAAACCACTCACCAGCTATGTTCATTTTCTTCACTCTTCTCTTGTCCTTGGGTTTTCTCCTCCTCTTCAATGCACAACaacgtcatcatcatcatcatgacCATACACCTCTCTCACACCCGATCATTGGGTGCCTCGTCTCTTTCTACCGAAACCGCCACCGTCTCCTCGACTGGTACACCGAGCACTTGGCCCAGTCCCCGACCCAAACCATCGTGGTACGCCGCCTTGGAGCACGTCGCACGGTGGTGACGGCGAACCCTCACAACGTGGAACACATCCTAAAGACCAATTTCGACAACTTCCCCAAGGGGAAGCCCTTCACCGAAATTCTCGGCGACCTTCTTGGGTGTGGCATATTCAATGTGGACGCTAGCAAGCCACGAGTTCACCACGCGCTCCCTCAGGGACTTCGTCGTGAAGACACTCAAGAAGAGGTCCTGCACAGGCTTCTCCCGCTGCTGGAGCGCGCCGCACGTGGCGGCCACGTGATCGACTTGCAGGACGTGCTGCGGAGGCTCACCTTCAATGCGGTATGCAAGTTCTCGCTGGGGCACGACCCGTACTGCCTGGATCTGTCGAGGCCCCTGCCGCCCCTTTTAACGGCGTTTGACGCCGCTTCTAAGGTAAGCGCCGCTCGAGGCGCGGCGCCGGTGTTTCTGGTGTGGAAGATGAAGAGAGCGTTCAATGTCGGCTCTGAGAAGGCGTTGAAGGAAACGGTGAGGCTGGTGCACGAGTCAGTGGCGGAGATTATAAGAGCGAAGAAGAGCGAAGTGGAAAAAGGCGGGACCGACCTACTAGCGCGGTTATTGGAGGCAGGACATGAGGAGACGGCAGTGAGGGACATGGTTATAAGCATGATAATGGCGGGGAGGGACACGACCTCCGCAGCAATGACGTGGCTATTTTGGCTGTTGTCAAAGCATCGAGAGGAAGAGGCGCTGATAGTGAGGGAGGTTTGTGGTTGTGGAGACCAGAGTGAGGGTTTGGGTTTGGATTACCAGTGTTTGAAAGAAATGAAGCTGCTGAAGGCTTGTTTGTGTGAGTCGATGAGGCTATACCCGCCCGTGGCTTGGGACTCGAAGCACGCGAGTGGTGCTGATGTGTTACCCGATGGGACCCGCGTGGGGAAAGGGGACAGGGTCACTTATTTCCCTTATGGGATGGGGAGAATGGAGGCTTTGTGGGGGAAGGATTGTTGTGAGTTTAAACCCCAGCGTTGGTTCCATGAGGACAATATTAATAATGGGGTTCTTAAGTGTGTGAATCCTTATAAGTTTCCAGTGTTTCAGGCGGGTCCCAGAGTGTGTCTTGGGAAGGAAATGGCTTTTATTCAGATGGAGTATGTGGTGGCTTCTATTCTTAACCGATTTGTGATTTCACCTGTCTCGGACCACCACCCACGTTTTGTTCCTCTTCTAACGGCACATATGGCGGGGGGATTCAAAGTGAGGGTCCACAATAGAACAACTGGAACTGAGAGTGAGAAGTGA 1578 0.5209 MHIRKKLEKKTNRKSGRLVESIIRVQFVKNHSPAMFIFFTLLLSLGFLLLFNAQQRHHHHHDHTPLSHPIIGCLVSFYRNRHRLLDWYTEHLAQSPTQTIVVRRLGARRTVVTANPHNVEHILKTNFDNFPKGKPFTEILGDLLGCGIFNVDASKPRVHHALPQGLRREDTQEEVLHRLLPLLERAARGGHVIDLQDVLRRLTFNAVCKFSLGHDPYCLDLSRPLPPLLTAFDAASKVSAARGAAPVFLVWKMKRAFNVGSEKALKETVRLVHESVAEIIRAKKSEVEKGGTDLLARLLEAGHEETAVRDMVISMIMAGRDTTSAAMTWLFWLLSKHREEEALIVREVCGCGDQSEGLGLDYQCLKEMKLLKACLCESMRLYPPVAWDSKHASGADVLPDGTRVGKGDRVTYFPYGMGRMEALWGKDCCEFKPQRWFHEDNINNGVLKCVNPYKFPVFQAGPRVCLGKEMAFIQMEYVVASILNRFVISPVSDHHPRFVPLLTAHMAGGFKVRVHNRTTGTESEK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2320 525 PRINTS E-class P450 group IV signature 368 384 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2320 525 PRINTS E-class P450 group IV signature 465 483 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2320 525 PRINTS E-class P450 group IV signature 309 335 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2320 525 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2320 525 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2320 525 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2320 525 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2320 525 PANTHER CYTOCHROME P450 94B3 48 515 - -
Ssu4g2320 525 SUPERFAMILY Cytochrome P450 65 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2320 525 Pfam Cytochrome P450 65 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2320 525 Gene3D Cytochrome P450 50 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2320 525 PANTHER CYTOCHROME P450 48 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2320 Ssu-Chr4 55545354 55548682 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2320 36 518 Cytochrome P450 AT3G48520 57.631 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2320 K20665 - gmx:100810294 755.747