Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2302 ATGTCTTCCCCCAGTTACCCCGATCTCTCTGGGCTACCCCAATTTGATCCCGATGATTTACAACTCCTGTCTCCCCCGGGTTCCCCCAATTCCTTTTGCACCGCTTTTGATGAGATGTGGGAGCCAGATTTCGAGCTGCGTTTGAAGGCATTGTTGACGGAGGCAGGGGTGTTAGAGGACGTGCAGCGTTGGAGGGAGGCACTTCGTGAGGCTGCTAGCATCTCAGGGGTTGTAATCCTGAATTCCAGgaaTGAAAATGAGGCTATTGAAAACATTGTTGAAAGTGTTACACGATTGTTAGACAAGACAGAGTTGTTTGTTGCCAATAATCCAGTGGGAGTAGAATCTCGAGTACAAGCTATTATTCAGCTACTAGACCACAAACTATCAAACGATGTTTTACTACTAGGGATATGGGGAATGGGAGGCATTGGTAAAACAACCATTGCAAAAGCCATTTACAATAAGATTGGCAGCAATTTTGAGGGAAGGAGCTTCCTTGCACATATTAGGGAAGTTTGGGGGCAAGATGCTGGCCAAGTCAATTTACAAGAACAACTTCTGTCTGATATtgacaaagaaacaaaaacaaaaataagtaacaTTGAATcaggaaaaattatattaaaggaAAGACTTCGCCATAAAAGGATACTTCTTATACTTGATGATGTGAATGAATTGCACCAATTGAATGCTTTGGGTGGAAGTCATGAATGGTTTGGTTCAGGGAGCAGAGTAATCATCACAACCAGAGATAAGCACATACTTAGAGGGAGAAGAGTTGACGAAGTGTACACAATGAATGGAATGGATGAAGGTGAATCTATTGAGCTTTTTAGTTGGCATGCATTCAAGCAAGCCAGTCCTAGAGAAGAATTTACTGAACTTTCTAGAAATGTAGTTGCATATTCTGGGGATTGCCACTAG 930 0.4075 MSSPSYPDLSGLPQFDPDDLQLLSPPGSPNSFCTAFDEMWEPDFELRLKALLTEAGVLEDVQRWREALREAASISGVVILNSRNENEAIENIVESVTRLLDKTELFVANNPVGVESRVQAIIQLLDHKLSNDVLLLGIWGMGGIGKTTIAKAIYNKIGSNFEGRSFLAHIREVWGQDAGQVNLQEQLLSDIDKETKTKISNIESGKIILKERLRHKRILLILDDVNELHQLNALGGSHEWFGSGSRVIITTRDKHILRGRRVDEVYTMNGMDEGESIELFSWHAFKQASPREEFTELSRNVVAYSGDCH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2302 309 Pfam NB-ARC domain 115 303 IPR002182 GO:0043531
Ssu4g2302 309 SMART AAA_5 132 272 IPR003593 -
Ssu4g2302 309 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 31 306 - -
Ssu4g2302 309 Gene3D - 98 264 IPR027417 -
Ssu4g2302 309 CDD AAA 112 253 - -
Ssu4g2302 309 Gene3D - 16 97 IPR035897 -
Ssu4g2302 309 PRINTS Disease resistance protein signature 135 150 - -
Ssu4g2302 309 PRINTS Disease resistance protein signature 212 226 - -
Ssu4g2302 309 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 31 306 IPR044974 GO:0006952
Ssu4g2302 309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 307 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2302 Ssu-Chr4 54605423 54614002 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2302 59 305 WRKY Transcription Factor Family AT4G12020 32.400 2.04e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2302 - - gmx:100808685 404.445