Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2299 ATGCTTGGACCAGCACTGCACCTGTACCTGCAAAATCGCACAGCACCAGCACCGAAACCGAGGACCAGCACCGCACCTGCTACATTTGGACCAGCTCAGCACTGCACCCAGCGACTGTTCCACTTGGTGAATCGTTCAATGACTGCATTGCTCCTGCTTGGTCTGGTGATTGATTTGACAAATACCTCTCGATACTATCCTGTGGcagatttaaaaaaagagtgcATCAAGCATGTTAAGATTCAATGCAAGGGGCGGGATTCTGTACCTGATAATTTATCTGTGAACCAGTTCGTCTATGAGGTTACACAATTTTTGTCACGTCAAAAACACTCAAAGAAGTATATACTTGTTCATTGTACACATGGGCATAATCGTACAGGATACATGATCATCCACTATCTAATGCGTGCTATGTCCATGTCTGTTACTCAGAGATCTTCTGAATTTGACCTCAATGGTGAAGCTGTTccagatgatgatgatgatggagtACCAGGCCCTGATTTGCAGGAGAACCATGAGACAGATGCACGAATGACAAATGATGATGTTTTAGGAGATGAGATACCTACTGATCAGCAAGATGCATTGCGTCAGTTCTGTTACCAAACGCTTAAATTGGGTGTTGGGGCCAGGGGACACACACAATTTCCAGGTTCACACCCAGTTTCTCTCAACAGGGATAATTTGCAATTGTTACGACAACGCTATTATTATGCAACATGGAAAGCAGATGGTACAAGATATATGATGCTAATAACAATGGATGGATGTTACTTGATTGATAGAAGTTTTAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGAGTACAAATGATGGTTTGGGCGAGAAGACCCACCACTTCACGTTACTTGATGGTGAGATGGTTCatcttttgaaaagaaattacagAAATTTTGCTATAATAGCAGAATCAAGGtctattCGACCCTTCTATGAACGGTGGAAGATGCTCGAGAAAGAAGTTATTGAGCCTAGGAATCATGAACGACACCATATATATCAGAGCAGAAATCCTTACTATAGATATGATCTGGAACCATTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTAAAGGAATTCATTAAAAGACTCTCACATGAAGCAGATGGTCTCATATTTCAGGGTTGGGATGATCCTTATGTACCACGTACTCACGAAGGACTCTTGAAGTGGAAATATGCTTATCTGAATTCAGTTGATTTTCTATTCGAGGTTGATGGTGATCGTGAGCTACTTTTTCTCTATGAACGGGGAAAGAAGAAACTCTTGGAAGGGAATAAGGTTGAATTCACAGATGGTTCAGATCCCTCCCTTTATTCCGGAAAGATCATAGAATGTTCTTGGGATTTTGATAAACAGGAATGGAATTTTTTGCGAATCAGAACAGATAAATCAACTCCGAATGAGTTTAATACTTACAGGAAGGTGATGCGAAGCATAAGAGACAACATCACTGAAGATGACTTGTTGAATGAAATAAGTGAGATAATTCGCCTTCCCATGTATGCCGACAGGATAAGAATTGACAGTAAAGCGAATCAGCATGCTAATGTCGCAAGGCGAAGGTGA 1623 0.3993 MLGPALHLYLQNRTAPAPKPRTSTAPATFGPAQHCTQRLFHLVNRSMTALLLLGLVIDLTNTSRYYPVADLKKECIKHVKIQCKGRDSVPDNLSVNQFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQRSSEFDLNGEAVPDDDDDGVPGPDLQENHETDARMTNDDVLGDEIPTDQQDALRQFCYQTLKLGVGARGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRSTNDGLGEKTHHFTLLDGEMVHLLKRNYRNFAIIAESRSIRPFYERWKMLEKEVIEPRNHERHHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYVPRTHEGLLKWKYAYLNSVDFLFEVDGDRELLFLYERGKKKLLEGNKVEFTDGSDPSLYSGKIIECSWDFDKQEWNFLRIRTDKSTPNEFNTYRKVMRSIRDNITEDDLLNEISEIIRLPMYADRIRIDSKANQHANVARRR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2299 540 Gene3D - 442 517 IPR012340 -
Ssu4g2299 540 SUPERFAMILY Nucleic acid-binding proteins 414 524 IPR012340 -
Ssu4g2299 540 MobiDBLite consensus disorder prediction 152 178 - -
Ssu4g2299 540 Gene3D Protein tyrosine phosphatase superfamily 27 153 IPR029021 -
Ssu4g2299 540 Pfam mRNA capping enzyme, catalytic domain 222 410 IPR001339 GO:0004484|GO:0005524|GO:0006370
Ssu4g2299 540 CDD Adenylation_mRNA_capping 193 411 IPR001339 GO:0004484|GO:0005524|GO:0006370
Ssu4g2299 540 Gene3D DNA ligase/mRNA capping enzyme 181 410 - -
Ssu4g2299 540 ProSitePatterns Tyrosine specific protein phosphatases active site. 118 128 IPR016130 GO:0016311|GO:0016791
Ssu4g2299 540 PIRSF mRNA_capping_HCE 145 540 IPR017074 GO:0004484|GO:0006370|GO:0140818
Ssu4g2299 540 PIRSF mRNA_capping_HCE 32 153 IPR017074 GO:0004484|GO:0006370|GO:0140818
Ssu4g2299 540 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 53 146 - -
Ssu4g2299 540 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 150 540 - -
Ssu4g2299 540 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 44 145 IPR029021 -
Ssu4g2299 540 Pfam Dual specificity phosphatase, catalytic domain 48 144 IPR000340 GO:0008138|GO:0016311
Ssu4g2299 540 PANTHER MRNA-CAPPING ENZYME 53 146 - -
Ssu4g2299 540 PANTHER MRNA-CAPPING ENZYME 150 540 - -
Ssu4g2299 540 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 183 411 - -
Ssu4g2299 540 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 96 145 IPR000387 GO:0016311|GO:0016791
Ssu4g2299 540 Pfam mRNA capping enzyme, C-terminal domain 415 508 IPR013846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2299 Ssu-Chr4 54508019 54522629 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2299 53 540 Protein tyrosine phosphatase (PTP) family AT3G09100 62.888 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2299 K13917 - gmx:100776633 912.138