Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2294 ATGATAGTTGCTATGGACTTGAATGCCTCACCGGTTCCGGAGGAAGATGACGATAGTTTTGAGGAGAATATACATGTTGAAGAGTTTCATGCACCTGAAGAACGCATAGAAAGTGGAGCTGATATAGCTCGCCGGGAGcgtgaagaaagaaagagacgGTTGAAGAGAGAACGACCAGATGACAGACCTGTACATGTGTCACAGTCACCTGGATATGATCAGCTATTTCACACTAAGAACCTTAAATCATATGATAAAAGCAGGCTTCCTCCGGGGTGGTTGGATTGCCCTTCATTTGGCCAGGAAATTTGTTGCATGATACCTTCTAAGGTTCCACTTGGTGAATCGTTCAATGACTGCATTGCTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTGATTGATTTGACAAATACCTCTCGATACTATCCTGTGGCAGATTTAAAAAAGAGTGCATCAAGCATGTTAAGGTTTGCAATTCAATGCAAGGGGCGCGATTCTGTACCTGATAATTTATCTGTGAACCAGTTCGTCTATGAGGTTACACAATTTTTGTCACGTCAAAAACACTCAAAGAAGTATATACTTGTCCATTGTACACATGGGCATAATCGTACAGGATACATGATCATCCACTATCTAATGCGTGCTATGTCCATGTCTGTTACTCAGgcaataaaaatattttctgaaGCTCGCCCTCCGGGAATCTACAAACCTGATTACATTGATGCATTGTACACATTTTATCATGAGAAAAAGCCTGAAATGGTAGTTTGTCCTCCTACTCCGGAGTGGAAGAGATCTTCTGAATTTGACCTCAATGGTGAAGCTGTTccagatgatgatgatgatggagtACCAGGCCCTGATTTGCAGGAGAACCATGAGACAGATGCACGAATGACAAATGATGATGTTTTAGGAGATGAGATACCTACCGATCAGCAAGATGCATTGCGTCAGTTCTGTTACCAAACGCTTAAATTGGGTGTTGGGGCCAGGGGACACACACAATTTCCAGGTTCACACCCAGTTTCTCTCAACAGGGATAATTTGCAATTGTTACGACAACGCTATTATTATGCAACATGGAAAGCAGATGGTACAAGATATATGATGCTAATAACAATGGATGGATGTTACTTGATTGATAGAAGTTTTAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGAGTACAAATGATGGTTTGGGCGAGAAGACCCACCACTTCACGTTACTTGATGGTGAGATGGTTATTGATACATTGCCAGATTCACAGAAGCAGGAGAGAAGATACCTTATATATGATCTGATGGCAATCAACCAAGTATCAGTAATAGAGCGACCCTTCTATGAACGGTGGAAGATGCTCGAGAAAGAAGTTATTGAGCCTAGGAATCATGAACGACACCATATATATCAGAGCAGAAATCCTTACTATAGATATGATCTGGAACCTTTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTAAAGGAATTCATTAAAAGACTCTCACATGAAGCAGATGGTCTCATATTTCAGGGTTGGGATGATCCTTATGTACCACGTACTCACGAAGGACTCTTGAAGTGGAAATATGCTTATCTGAATTCAGTTGATTTTCTATTCGAGGTTGATGGTGATCGTGAGCTACTTTTTCTCTATGAACGGGGAAAGAAGAAACTCTTGGAAGGGAATAAGGTTGAATTCACAGATGGTTCAGATCCCTCCCTTTATTCCGGAAAGATCATAGAATGTTCTTGGGATTTTGATAAACAGGAATGGAATTTTTTGCGAATCAGAACAGATAAATCAACTCCGAATGAGTTTAATACTTACAGGAAGGTGATGCGAAGCATAAGAGACAACATCACTGAAGATGACTTGTTGAATGAAATAAGTGAGATAATTCGCCTTCCCATGTATGCCGACAGGATAAGAATTGACAGTAAAGCGAATCAGCATGCTAATGTCGCAAGGCGAAGGTGA 2058 0.397 MIVAMDLNASPVPEEDDDSFEENIHVEEFHAPEERIESGADIARREREERKRRLKRERPDDRPVHVSQSPGYDQLFHTKNLKSYDKSRLPPGWLDCPSFGQEICCMIPSKVPLGESFNDCIAPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVADLKKSASSMLRFAIQCKGRDSVPDNLSVNQFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDGVPGPDLQENHETDARMTNDDVLGDEIPTDQQDALRQFCYQTLKLGVGARGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRSTNDGLGEKTHHFTLLDGEMVIDTLPDSQKQERRYLIYDLMAINQVSVIERPFYERWKMLEKEVIEPRNHERHHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYVPRTHEGLLKWKYAYLNSVDFLFEVDGDRELLFLYERGKKKLLEGNKVEFTDGSDPSLYSGKIIECSWDFDKQEWNFLRIRTDKSTPNEFNTYRKVMRSIRDNITEDDLLNEISEIIRLPMYADRIRIDSKANQHANVARRR 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2294 685 Gene3D Protein tyrosine phosphatase superfamily 65 286 IPR029021 -
Ssu4g2294 685 CDD Adenylation_mRNA_capping 328 556 IPR001339 GO:0004484|GO:0005524|GO:0006370
Ssu4g2294 685 ProSiteProfiles ATP-dependent DNA ligase family profile. 439 583 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ssu4g2294 685 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 318 556 - -
Ssu4g2294 685 Pfam mRNA capping enzyme, C-terminal domain 560 653 IPR013846 -
Ssu4g2294 685 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 685 - -
Ssu4g2294 685 Gene3D DNA ligase/mRNA capping enzyme 316 555 - -
Ssu4g2294 685 Pfam Dual specificity phosphatase, catalytic domain 141 263 IPR000340 GO:0008138|GO:0016311
Ssu4g2294 685 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 280 IPR029021 -
Ssu4g2294 685 ProSitePatterns Tyrosine specific protein phosphatases active site. 210 220 IPR016130 GO:0016311|GO:0016791
Ssu4g2294 685 SUPERFAMILY Nucleic acid-binding proteins 559 669 IPR012340 -
Ssu4g2294 685 MobiDBLite consensus disorder prediction 1 71 - -
Ssu4g2294 685 PIRSF mRNA_capping_HCE 75 685 IPR017074 GO:0004484|GO:0006370|GO:0140818
Ssu4g2294 685 MobiDBLite consensus disorder prediction 287 314 - -
Ssu4g2294 685 SMART dsp_5 123 265 IPR020422 GO:0006470|GO:0008138
Ssu4g2294 685 Gene3D - 587 662 IPR012340 -
Ssu4g2294 685 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 188 257 IPR000387 GO:0016311|GO:0016791
Ssu4g2294 685 CDD RNA_5'-triphosphatase 92 260 - -
Ssu4g2294 685 MobiDBLite consensus disorder prediction 23 64 - -
Ssu4g2294 685 Pfam mRNA capping enzyme, catalytic domain 357 555 IPR001339 GO:0004484|GO:0005524|GO:0006370
Ssu4g2294 685 PANTHER MRNA-CAPPING ENZYME 3 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2294 Ssu-Chr4 54434497 54453384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2294 1 685 Protein tyrosine phosphatase (PTP) family AT3G09100 68.017 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2294 K13917 - gmx:100776633 1323.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2294 4 54434497 54453384 Ssu4g2294 4 54434497 54453384 ECH