Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2258 ATGGAACCGGAGGAACCCGCCGCCACCGCCTTGGACGCCGCCGACGGGAGCGGCGACGAGGGGCTGCTCGGGctcggcggcggcggcggcggcagGGACAGAGTAAAGGGTCCTTGGTCGCCGGAGGAGGACGCCATTCTGAGTCGTCTGGTGAGCAAGTTCGGCGCCAGAAACTGGAGCCTCATCGCGCGCGGGATCAGCGGAAGATCCGGCAAGTCGTGTCGGCTCCGGTGGTGCAACCAGCTCGACCCCGCCGTTAAGCGCAAGCCCTTCACCGATGAGGAGGACCAGATCATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTATCAGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCAACTTTGAGGCGTCGGGGAGTTGAACTTGATAAGATTAAATTAGAATCTGGCAACTTCATGGAAGATGTTAGCTTGGAGAAAGCAAAAGCATCATCAGAAGACACTCTATCATGTGGGGATGTTTCTTTGAAATCCTCAGACGGGAGAGATGTCAGTTCTGTGGAGATCATGGATGATAAATATGACGACAAAGCACAAACTGAGGGTCAATTACACCATGAAGTCAAGGACCCGCCTACCCTTTTTCGGCCAGTAGCACGCGTGAGTGCTTTTAATGTATATCACTCATTTGACACCGTACAGCCTTCCACATCAATTCAAGGACCTGTTCCGATGCAAGGACCCATTTTACAATCATCAAAACCAGACATGGAATTTTGTAAAATGCTTGAAGGAATTTGTGGTGACCGGTCAGTGCCTCATCAATGTGGCCATGGTTGCTGTGCTGCTCCAAAATGTATAAAGTCCAAAAGCTCTTTGTTGGGACCAGAATTCATTGAATTTTCGGAACCCCCATCTTTCCCAAATTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAGTAGTAGTGTCAAAATGATGGGCAGCACCTCTGGCAGGGTAGTATCTAATGGATCTCAAGTACATATTGGCAATTAG 1062 0.4802 MEPEEPAATALDAADGSGDEGLLGLGGGGGGRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAIHGNKWAAIARLLSGRTDNAIKNHWNSTLRRRGVELDKIKLESGNFMEDVSLEKAKASSEDTLSCGDVSLKSSDGRDVSSVEIMDDKYDDKAQTEGQLHHEVKDPPTLFRPVARVSAFNVYHSFDTVQPSTSIQGPVPMQGPILQSSKPDMEFCKMLEGICGDRSVPHQCGHGCCAAPKCIKSKSSLLGPEFIEFSEPPSFPNFELAAIATDISNLAWLKSGLESSSVKMMGSTSGRVVSNGSQVHIGN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2258 353 PANTHER MYB PROTEIN-RELATED 6 330 - -
Ssu4g2258 353 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Ssu4g2258 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 86 IPR017930 -
Ssu4g2258 353 PANTHER - 6 330 - -
Ssu4g2258 353 Gene3D - 35 87 - -
Ssu4g2258 353 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Ssu4g2258 353 CDD SANT 38 80 IPR001005 -
Ssu4g2258 353 Gene3D - 90 136 - -
Ssu4g2258 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Ssu4g2258 353 Pfam Myb-like DNA-binding domain 39 97 - -
Ssu4g2258 353 CDD SANT 90 133 IPR001005 -
Ssu4g2258 353 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Ssu4g2258 353 SMART sant 35 84 IPR001005 -
Ssu4g2258 353 SMART sant 87 135 IPR001005 -
Ssu4g2258 353 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2258 Ssu-Chr4 53534571 53541813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2258 21 350 MYB Transcription Factor Family AT3G09230 51.906 4.47e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g2258 Myb_DNA-bind_6 6.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2258 K09422 - gmx:100811740 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2988 6 68662298 68666586 Ssu4g2258 4 53534571 53541813 ECH
Ssu4g2258 4 53534571 53541813 Ssu4g2258 4 53534571 53541813 ECH