Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2257 atgtCAAGTCTACAGATGTCTCATGTGGATTTGGAGCAAGGGAGTCACCACCGTTCTGTGAGTGGCAGTGACATGAGCATGTGCTTTTCTGATGCTGAGAATGGTTCTTGCTATTCCCATTTCTATTCAACAAATGGTGACCCTTATGATGATTACACCTTTGCTTCTGTTTCTGATGCTGAGGGTGGTGGGGGTGCTGCTGATTCCAGGAGGGCTTCTTCTGTCACTGATTGTTCAGTGGAGGTGGAAATTGAAAGTGGGGTTCCTGAAATTAAGGTGCATTTGGCCAAAGTCGAGAGGGATTGCAGGATTTGTCACCTTGGTTTGGAGAGTGATAGTCAAGAGTCTGGAGTTCCAATTGAATTGGGGTGTTCTTGCAAGGATGATTTAGGTGCTGCTCACAGGAACTGTGCTGAGGCCTGGTTCAAGATTAAGGGGAATAGgacGTGTGAAATATGTCATTCTGTTGCACGGAACGTTTATGGAGCAAATGAGGAGACAACACAGACTTTGAGTGACAGCAACAATGCTGCTGCAGCATCCACAATCTCAACATCAGCTCCTCCAGCAGAAACTCGAAGATTTTGGCACGGGCATCGCTTCCTGAATTTTCTGCTTGCTTGTATAGTTTTTGCATTTGTCATATCTTGGCTTTTTCACTTCAATATGCCCTCATCATAA 681 0.4479 MSSLQMSHVDLEQGSHHRSVSGSDMSMCFSDAENGSCYSHFYSTNGDPYDDYTFASVSDAEGGGGAADSRRASSVTDCSVEVEIESGVPEIKVHLAKVERDCRICHLGLESDSQESGVPIELGCSCKDDLGAAHRNCAEAWFKIKGNRTCEICHSVARNVYGANEETTQTLSDSNNAAAASTISTSAPPAETRRFWHGHRFLNFLLACIVFAFVISWLFHFNMPSS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2257 226 CDD RING_CH-C4HC3_MARCH 102 154 - -
Ssu4g2257 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 163 IPR013083 -
Ssu4g2257 226 SUPERFAMILY RING/U-box 99 157 - -
Ssu4g2257 226 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Ssu4g2257 226 PANTHER ZINC FINGER, RING-CH-TYPE 5 225 - -
Ssu4g2257 226 Pfam RING-variant domain 102 153 IPR011016 GO:0008270
Ssu4g2257 226 SMART ringv_2 101 154 IPR011016 GO:0008270
Ssu4g2257 226 MobiDBLite consensus disorder prediction 1 22 - -
Ssu4g2257 226 PANTHER OS01G0850200 PROTEIN 5 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2257 Ssu-Chr4 53500537 53503817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2257 68 226 C3H Transcription Factor Family AT5G05830 59.375 1.07e-67 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2257 - - gmx:100812277 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2987 6 68649052 68653981 Ssu4g2257 4 53500537 53503817 ECH
Ssu3g1209 3 29457829 29460407 Ssu4g2257 4 53500537 53503817 ECH
Ssu4g2257 4 53500537 53503817 Ssu6g2987 6 68649052 68653981 ECH
Ssu4g2257 4 53500537 53503817 Ssu4g2257 4 53500537 53503817 ECH