Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2255 ATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCCCACCTCAAACCTTCTGTTCTTGAATCCTCTGACCAAGAAAATGGTGAGAAGGGTGAGAAAAAATTGTGGCCCAGTTTTGGTGAGTTCAGTTTGGAGCAACTGAAGGCTGCCACAAATGGGTTCTCCTCAGAAAGCATAGTGTCTGAGCATGGTGAGAAAGCTCCCAATGTTGTTTACAAAGGAAAACTTGATAATGGACAGTGGATCGCCATCAAACGTTTCAACAAGTTTGCTTGGCCCGATTCTCGCCAATTCCTCGAGGAAGCCAGACAAGTGGGGAGCCTTAGAAGTGAACGTCTAGCAAATTTGATTGGTTATTGCTATGAAGGGGAAGAGAGGCTGCTTGTAGCAGAGTTTATGCCGCATGAAACTCTGGCTAAGCATCTCTTTCATTGGGAGGCACAGCCAATGAAATGGGCAATGAGGTTGAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACTAGCAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTACAGGATCTTGTTTGATCAGGATGCTAATCCCAGGTTGTCTTGCTTTGGACTCATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAACTTGGCTTTCACCCCTCCTGAGTACTTGAGGACTGGTAGAGTGACTCCAGAGAGTGTGGTTTACAGTTTTGGAACCCTGTTGCTAGATCTCCTGAGTGGTAAACATATTCCCCCAAGCCATGCACTTGACCTGATTCGTGGCAAAAACTTTTTGATGTTGATGGATTCTGCCTTAGAGGGTCACTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGGCTTCTCGTTGTTTACAATATGAAGCCCGTGAGAGGCCAAATGCGAAGTCTCTTGTTGCATCTCTTTTGTCACTTCAGAAAGAAACAGAGGTCCCCTCATATGTTCTGATGGGTCTCCGGCAAGAAACTGCATCCTCAACAAAGCAATTGTCATTGACACCTTTTGGTGAAGCTTGTTTGAGACTGGATCTTACTGCAATACATGAAATATTAGAGAAGACTGGTTACAAGGATGATGAAGGAATTGCCAATGAGGTTTGCTACCATCTTCAACTTGCACAAGAGGGTTTCATCTCACTTgaatag 1170 0.4453 MGARCSKFSFCWFHSHLKPSVLESSDQENGEKGEKKLWPSFGEFSLEQLKAATNGFSSESIVSEHGEKAPNVVYKGKLDNGQWIAIKRFNKFAWPDSRQFLEEARQVGSLRSERLANLIGYCYEGEERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDANPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVASLLSLQKETEVPSYVLMGLRQETASSTKQLSLTPFGEACLRLDLTAIHEILEKTGYKDDEGIANEVCYHLQLAQEGFISLE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2255 389 SUPERFAMILY Protein kinase-like (PK-like) 37 320 IPR011009 -
Ssu4g2255 389 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Ssu4g2255 389 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Ssu4g2255 389 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 378 IPR045845 GO:0004672|GO:0009742
Ssu4g2255 389 Gene3D Transferase(Phosphotransferase) domain 1 136 327 - -
Ssu4g2255 389 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 378 - -
Ssu4g2255 389 ProSiteProfiles Protein kinase domain profile. 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2255 Ssu-Chr4 53489541 53493440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2255 18 310 Glycoside Hydrolase AT3G07070 33.022 3.46e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Ssu4g2255 PK_Tyr_Ser-Thr 1.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2255 - - gmx:100814477 753.436