Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2247 ATGCGTGACTTGCACGGGACACGTTTGTTTGCTATCCGCGCACGCAAGTCGGACTCGATGTACGAGGCCTCGGAGCACCTTCTGTCGGTGATCGACAAGCTCCTGGCGGACTGGTTGCAAATCAACGACCACCACCACGACTGGTACGAGATCCTCCAAATCCACCGCTACACTATCAACATTGACCACATCGCTACCCAGTACCGCTGCCTCGCCCTCCTCCTCGACCCCCACCGCAATCTCTTGGCCTTTGCCAACCATGCCTTCTCCTTCGTCCACGATGCCTGGTCCGTCCTCTCCAACCCTGCTAAGAGATCGCCGGAATTgaggaaagagataaaagttagGTCTAAGAGAGATAATAGAGCGGAAGGAGAAAGATGGtcaaaacagaaaaattaa 402 0.5075 MRDLHGTRLFAIRARKSDSMYEASEHLLSVIDKLLADWLQINDHHHDWYEILQIHRYTINIDHIATQYRCLALLLDPHRNLLAFANHAFSFVHDAWSVLSNPAKRSPELRKEIKVRSKRDNRAEGERWSKQKN 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2247 133 Gene3D DnaJ domain 37 129 IPR036869 -
Ssu4g2247 133 SUPERFAMILY Chaperone J-domain 39 106 IPR036869 -
Ssu4g2247 133 MobiDBLite consensus disorder prediction 109 133 - -
Ssu4g2247 133 ProSiteProfiles dnaJ domain profile. 47 123 IPR001623 -
Ssu4g2247 133 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 106 - -
Ssu4g2247 133 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 2 106 - -
Ssu4g2247 133 CDD DnaJ 47 101 IPR001623 -
Ssu4g2247 133 SMART dnaj_3 46 104 IPR001623 -
Ssu4g2247 133 Pfam DnaJ domain 47 106 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2247 Ssu-Chr4 53318438 53318839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2247 3 106 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 47.170 1.29e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2247 - - gmx:100811866 161.384