Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2236 atggaTATGCATTCAGGAGATGACATGCCAATGTCTCATGGCACGGATAACAGCATGAAGATGCACATGAGCCTCTATTGGGGCAAAGATGCCATAGTACTTTTCTCTGGGTGGCCTAAACACAGTGTTGGCCACTACATCTTAGCCATCTTGTTTGTGTTTTTCCTTGCAATGATTGCTGAGCTTCTCTCCAACCAGCCCAGCATCAAGCGTGGGACTAATCCCATCGTAGGAGGGTTGACTCAAGCAACCTTCTTCGTCTTCCGCATAAGCTTCCTTTACTTGGTCATGCTTGCTGTCATGTCCTTCAATTTGGGAGTCTTCATAGCTGCTGTGGCTGGCCACACCTTGGGCTTCTTCTTTGCCAAGTCTCGTGCTCTAGCTCTTGCCAATAGAGAACAACACGGGTCCTCACTTGCtcataaagtttaa 432 0.4653 MDMHSGDDMPMSHGTDNSMKMHMSLYWGKDAIVLFSGWPKHSVGHYILAILFVFFLAMIAELLSNQPSIKRGTNPIVGGLTQATFFVFRISFLYLVMLAVMSFNLGVFIAAVAGHTLGFFFAKSRALALANREQHGSSLAHKV 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2236 143 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 142 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu4g2236 143 Pfam Ctr copper transporter family 23 64 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu4g2236 143 Pfam Ctr copper transporter family 74 121 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu4g2236 143 PANTHER CTR FAMILY COPPER TRANSPORTER 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2236 Ssu-Chr4 53134641 53135072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2236 25 139 Inorganic Solute Cotransporters AT3G46900 43.103 3.52e-27 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2236 K14686 - gmx:100808693 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2236 4 53134641 53135072 Ssu4g2236 4 53134641 53135072 ECH