Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2218 atgGCTGAGGGTTTTGAGGCTTACCATGTGCCACAACAAAGCAGAAGAGATAAGCTTAGAGTTGTGGTGACACAGAACCAACATGGTCTCGTTGAACCCTCGACTTTGCTTCCTTTGTACGACCCTTCTTCGTTTATATCTTCTGATTTGTTAACGAGCTTCCACAACAGCCAAAAGCACAACTTGGGTTGTGGTGTGAAGGAAGAACGTTCGAATTTGATGATGGGTTTTGCAGGAGGAGGAGGAATCATGAACAAtggctcttcttcttcttcgtgtTGTTCTTCTAACTCGTCTTCGGTTTCTTACTTGGATCCTGAATCGTCTTTGCCTTTGAACCAAGCTACAATTCAGgttattaacaacaacaacaataacaatagcaacaacatgTTTCTCTACCAAGCACAGAACCTGAGAGAGTTTGATCAAggttataataataatggtgaGATCATGGTGTTTAAGCCTGAGCCTTTGTCTTTGTCTCTGTCATCACACAACAACGGTGTGAATCTTCAGCGATATGGATCTGTGGCTTATGGTGATaaggttggtggtggtggtggtggatgtgTGATTTATGGTGGTTCTGGTTTGAGTGAAGTTTCGAGGAGCACAGTGCCAATGGGACCATTTACTGGTTATGCTTCTATATTGAAGGGATCGAGGTTCTTGAAGCCTGCGCAGCAATTATTGGAAGAGTTATGTGATGTTGGTGGAGTTTGTGCTGAGAAGATGGTGGCTGATGCATCGTTGATGGAGCCtattcctcctcctcctcctgaGAGTTCAAGTGAGGATCCACTAGGGGATCATGGGGGTGATCAGTGTCGCAAAAAGTCAAGGCTGCTAACTATGCTTGATGagGTTTACAGGAGGTACAGGCAATACTATCAGCAGATGCACGCGGTAGTAACATCATTTGAGTATGTTTCAGGCCTCAGCAATGCAGCTCCCTATGCAAGTTTGGCTATAAAAGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCAATTACTGATCAGCTTCAGTTTGCCAATAAAGCTCATTTTCACATCAGCAACAGGAAGGATGAATCTCCAAGGTTTGGCAACAGTGATAGAGGCCCTTACAGCCAAAGGCCTGGGTTTCTTGAGCACCAACCTGTTTGGCGGCCTCAAAGAGGACTCCCCGAGCGTGCCGTGACTGTTCTCCGAGCATGGTTGTTTGAGCACTTTCTGCACCCTTATCCCACTGATACCGACAAGCTATTGTTGGCTAAACAAACTGGTCTATCTCGTAGCCAgGTGTCTAATTGGTTCATTAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTAGAAACACGGCAAGCTCAAAAGAATTTACAGAAGGAAGAATGTTGCAGGAACAAGTCAAGTGCTCATTTGCCTTCTGATAACTCCATTGTTTCTGAGAATCCATCTACCTCCACAGATAAGTTTCAGGAAGCTACTTACAAGCGTGCTATAAACGAACTTCCTAACATACCAGTTAGGACTCAGGAACAACTGAATCTTCCCTGCACCAGCAATCAGCCAGGGGGTGTTGGAGTTAGCATGGGTGGTAGTGCAAGCAATAGTGTTTCATTGACACTAGGCCTTTATCAAAATCATGGGATTGGTTTGGCTGAACCTTTCTCCTTGAATGCGGCACAGCGATTTGGTGTTGCTCTTGAAACCAATAATGAAGGTTATGTTATGAGTGGTTATGAATCACAAAATAGGCATTTTGGAAGAGATGTCATTGGAGGACAACTGTTGCATGACTTTGTAGGCTGA 1818 0.4109 MAEGFEAYHVPQQSRRDKLRVVVTQNQHGLVEPSTLLPLYDPSSFISSDLLTSFHNSQKHNLGCGVKEERSNLMMGFAGGGGIMNNGSSSSSCCSSNSSSVSYLDPESSLPLNQATIQVINNNNNNNSNNMFLYQAQNLREFDQGYNNNGEIMVFKPEPLSLSLSSHNNGVNLQRYGSVAYGDKVGGGGGGCVIYGGSGLSEVSRSTVPMGPFTGYASILKGSRFLKPAQQLLEELCDVGGVCAEKMVADASLMEPIPPPPPESSSEDPLGDHGGDQCRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQLQFANKAHFHISNRKDESPRFGNSDRGPYSQRPGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLLLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKNLQKEECCRNKSSAHLPSDNSIVSENPSTSTDKFQEATYKRAINELPNIPVRTQEQLNLPCTSNQPGGVGVSMGGSASNSVSLTLGLYQNHGIGLAEPFSLNAAQRFGVALETNNEGYVMSGYESQNRHFGRDVIGGQLLHDFVG 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2218 605 SUPERFAMILY Homeodomain-like 387 452 IPR009057 -
Ssu4g2218 605 ProSiteProfiles 'Homeobox' domain profile. 382 445 IPR001356 GO:0003677
Ssu4g2218 605 MobiDBLite consensus disorder prediction 473 491 - -
Ssu4g2218 605 MobiDBLite consensus disorder prediction 357 378 - -
Ssu4g2218 605 MobiDBLite consensus disorder prediction 470 491 - -
Ssu4g2218 605 CDD homeodomain 385 446 IPR001356 GO:0003677
Ssu4g2218 605 MobiDBLite consensus disorder prediction 253 278 - -
Ssu4g2218 605 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 18 581 - -
Ssu4g2218 605 Pfam Homeobox KN domain 402 441 IPR008422 GO:0003677|GO:0006355
Ssu4g2218 605 Gene3D - 388 450 - -
Ssu4g2218 605 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 18 581 - -
Ssu4g2218 605 SMART prehox3 214 342 IPR006563 -
Ssu4g2218 605 SMART HOX_1 385 449 IPR001356 GO:0003677
Ssu4g2218 605 Pfam Associated with HOX 219 341 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2218 Ssu-Chr4 52044745 52051083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2218 143 605 Homeobox Transcription Factor Family AT5G02030 50.101 3.63e-122 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu4g2218 POX 7.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2218 - - gmx:100805512 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2218 4 52044745 52051083 Ssu4g2218 4 52044745 52051083 ECH